Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07040 452 / 2e-159 unknown protein AT1G27030 315 / 3e-106 unknown protein AT1G27020 312 / 4e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030795 [exp] 580 / 0 AT1G07040 390 / 2e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194800 [exp] 486 / 2e-172 AT1G07040 471 / 6e-167 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013272 pacid=23166659 polypeptide=Lus10013272 locus=Lus10013272.g ID=Lus10013272.BGIv1.0 annot-version=v1.0 ATGATCACCCTCTCCGCATCATCCTCTGCTCTCAGACCAAACCCTCATCTTCAATCACTTCCTCCGTCTTCTCCTCCTCCCCCGTCAACCTCCTTCGCCA ATTCGCGTCGTCACCCTTCAGCTGCTTCACTGAAACTGTCTCAGATGTCTATCGGATCGCGCTCCCTTTGCAGCGTTTCTGCTTCCAAAGCTGAAAATGG ATCTCCCTCTTCTCCTTCTAAGGTTCTGGAAAGTGGAAACCGATCTACTCTCTTCGGGTCGGATTCGTTCCTCAGGAGCGTTCTGGAGCGAGTGGAATCG GTTTATCTGAGCAGGAACCCGACTGCGAAAGCCATCTTGGAGCTTGTGGAGTCGGCCGATGGCTGTCAGCAAATCTGTTACGATCATCTCGCTTTCAGGA CGTTTGGGGTGGATGGTCATGGGATTGATTCTATGGCGAGTTTGTTCTTGGATTATGGATACAAGCAAATGGAAGAGCTCAGATTCCCTGCTAAGAAACT GAAAGCACTGTGGTTTTCACCTCCCAGTGATGAAGTTCATGTTAATGGCGGGGCTGGGGGTGCAATTGTTATTGGGGGTAGCCGTATCCATGGACCTTTG CCTAGGGTGTTCATCTCTGAGTTGCTTGTCGATCAGATGAGTCCACAAGCTCAGGAAATCATTCGAAAGTATGTAGAAATATCGGGAAAGGGATACAAGC ATGCAGGTCTTGCAAGTGCTCTTGGAATTTTGACATGGAACAAGCCTCTGCATTCTGAGTTTCAGCAGTTGGGAAGAGAGAGTGAATATGCTGCATGGAC CCTCGTCAATGGATATGCCCTCAATCACGTCACTATTTCCGCTCATCGGCTCAAGTCTCACTTGAAGGAAATCAACAGCCTCAATCGGTTCATCAAAGAG AACGGCTTTAAATTGAACTCCGAGGGTGGTGTCCTCAAAGTGAGCCCTGACGGTCTTCTGCAGCAAAGTTCAACCGTAGCAGATTCGATGCCTTTCCAAT TTGCTGATGGTGCCGTGGAACCAGTCCCTTGTTCCTACATCGAGTTCGCCGAACGCCTCGTGCTACCCGAACACAAGAATCTCCCGAACGACAAGGTCGA AGAGTTTCACAGGCGAGACGGGTTCGAGGTTGGAAATGCTGATAAGATCTTTGAGAGCACGTCCAAAGAGCAATTAACACGGAGAGCTGCGTGA
AA sequence Show only first row Show all	>Lus10013272 pacid=23166659 polypeptide=Lus10013272 locus=Lus10013272.g ID=Lus10013272.BGIv1.0 annot-version=v1.0 MITLSASSSALRPNPHLQSLPPSSPPPPSTSFANSRRHPSAASLKLSQMSIGSRSLCSVSASKAENGSPSSPSKVLESGNRSTLFGSDSFLRSVLERVES VYLSRNPTAKAILELVESADGCQQICYDHLAFRTFGVDGHGIDSMASLFLDYGYKQMEELRFPAKKLKALWFSPPSDEVHVNGGAGGAIVIGGSRIHGPL PRVFISELLVDQMSPQAQEIIRKYVEISGKGYKHAGLASALGILTWNKPLHSEFQQLGRESEYAAWTLVNGYALNHVTISAHRLKSHLKEINSLNRFIKE NGFKLNSEGGVLKVSPDGLLQQSSTVADSMPFQFADGAVEPVPCSYIEFAERLVLPEHKNLPNDKVEEFHRRDGFEVGNADKIFESTSKEQLTRRAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07040			unknown protein		Lus10013272 [exp]	0	1
AT1G07040			unknown protein		Lus10030795 [exp]	1.0	0.9654
AT1G31940			unknown protein		Lus10012117 [exp]	2.4	0.9137
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	2.8	0.9117
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	2.8	0.9281
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	3.5	0.9086
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	8.9	0.8884
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	10.2	0.9086
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	12.7	0.8844
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	13.0	0.8781
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10009755 [exp]	13.0	0.8529

Compare expression of checked genes

Lus10013272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.