Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17900 684 / 0 unknown protein AT5G15080 466 / 2e-153 Protein kinase superfamily protein (.1) AT3G01300 451 / 1e-147 Protein kinase superfamily protein (.1) AT3G28690 439 / 4e-145 Protein kinase superfamily protein (.1.2.3) AT5G01020 353 / 1e-111 Protein kinase superfamily protein (.1) AT1G07570 333 / 3e-104 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 332 / 1e-103 APK1B protein kinase 1B (.1.2.3) AT2G05940 331 / 1e-102 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G56460 328 / 3e-102 Protein kinase superfamily protein (.1) AT2G07180 328 / 6e-102 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030797 [exp] 1261 / 0 AT3G17900 731 / 0.0 unknown protein Lus10036712 [exp] 1040 / 0 AT3G17900 820 / 0.0 unknown protein Lus10037215 [exp] 1038 / 0 AT3G17900 825 / 0.0 unknown protein Lus10030796 [exp] 596 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 493 / 1e-163 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 491 / 4e-163 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 373 / 1e-118 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 372 / 4e-118 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10036762 [exp] 349 / 3e-109 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033900 [exp] 804 / 0 AT3G17900 843 / 0.0 unknown protein Potri.010G033800 [exp] 518 / 8e-174 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 513 / 4e-172 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 470 / 4e-155 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 464 / 4e-153 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 460 / 1e-151 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 376 / 3e-120 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 371 / 2e-118 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 357 / 1e-112 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 354 / 7e-112 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013273 pacid=23166630 polypeptide=Lus10013273 locus=Lus10013273.g ID=Lus10013273.BGIv1.0 annot-version=v1.0 ATGAATTTTTTGCTGCGGTCTACTAGTCACCATGTAGTACCTGAGAAGGTTCCTGCTCATGAACCTGCCGTTGACGTACAGTATATGGCCAAACCTACCA AGACTTTGGAAGGTCTGATATCTGAAGATCCTTTTCCCGAGTCTCCAATGGCTCGAGGTCGCGAAGGAGAGCGAGAGGAAGTTGGAGCTGAGAATGGAAA TGAAAATGATGCTGTAAAGAAAGATTCTAGTGTGATTGAGGGACATTCGGATGTTCTGGAAGACGACGGATGGATTACCATTCCACACAAGGAACTTCCT GAAGATTGGAGTTCTTCACCAGATATACAGTCGTTACGATCCTTGGACCGGTCATTTGTCTTTCCTGGTGAACAAGTTCATATACTAGCATGTTTATCAG CATCAAATCAAGATACGGAAACGATTACTCCGTTCAAAGTTGCTGCTGTTATTTCTCAAAGTGGCAGACAGAGTCCGGAGCGACGAAATGGGAACAACTT AAGTGACAGAACTTTGGAGGAGGGTAATCTTGGTGGCGAAGATGCGGAAAAATTGTTGCAACAGAAGCTCGCCCCAGAAGATGTTGTTTCTGCCAGTGAA TGTGTCCAAATCCGTCTGTTGGCTGACATGGATGGTCAGATCTCATTTGGAAGTGGCACCGGAAAGAGAACTCATCTCAATGCTCTCATTGATAAAGGGA ATTTCGACGCCAATGTTGCTGGTGGAGCTGCCAGAAACAGTGTTAACTGTTGGTCTCTTTCGAATGGAGATGTCGTGGTACTTCTACAAGTTAATGTTGG TACTCATATTCTCAGAGACCCTGTCATTGAGATTCTTCAGTTTGAGAAATACCAAACAAGTAATCTGTCTTCTCCAAGCCCCAATACTCTGAATTTTGCT AATGCTGACCCTTATGGACAACTGTTGAAATGGTTGCTTCCTTTGGATAACACTCATTATCCTCCTCCACGTGCCTTATCCCCACCCCAGAGACCTCCTA TTTCAGTTATTGCTCCCACATCTCAGAAACCTGTGTCTTCTGGTTCACAACTTTTCTCTCATTTTAGAAGTTACTCCATGTCATCAATACCTCAGGCAAG TATTCCACCTACTCAACCAGTTAAAGCTCAAAGCTCTAAACCAAAATTTGACATCGATGAATGGGAAGAGCACTCAACTCCGAAATTGAGAAAAGATCGA CAAAATGTTGGCGATGGAATTTTCTCTTTCCGAGGTGTTTCATTAGAGCAAGAAAGATTTTCAGTGCGTTGTGGTCTGGAAGGCATGTACATCCCAGGAA AAAGATGGAGAAGAAAACTTGAAATTATTCAACCTGTGGAGATCCATTCCTTTGCTGCACATTGTAATACAGATGACTTGCTTTGTGTTCAGATAAAGAA CATATCTCCAGCATACTTGCCGGATATAGTGGTGTACATAGATGCTATAACAATGGTTTTCAATGAGGCTGCAAAGGATGGCGTACCATTATCCTTGCCA ATAGCATGCATTGAAGTAGGAGATGATCATTGTTTACCAAATCTAGCCCTCAGGAGGGGTGAACAACACTCTTTCATCCTCAAACCAGCATCGTCAATGT GGAAAAGTCCAAAGGTTCCCGGTGAGAGAAATTTTTCATCAGCTCTACGTCAATCTCAGCTTGCTACTGAAACGAGTAATAGTAATTCAAACACTGACAT ATATGCTATCATGGTATCTTGTCGCTGCAACTACACTGAGTCGAGACTGTTTTTCAAGCAGCCAACTGATTGGAGACCTCCCATCTCTAGGGATCTCTTG ATCTCTGTTGCACCCGAACTGTCCCTCCGGTCTTCTCCAAGTGATAAAGTGTCCCATCTTCCAGTTCAGGTTTTAACTCTTAGAGCCTCCAATCTGACAT CCGAAGATCTCACTCTAACAGTTCTTGCTCCGTCCTCATTCACCGCTCCTCCATCAGTCGGTTCCTTGATTTCGACACCAGCAACTCAGATAGATACAAC AATTGCCACAAGAAAACGTACTGAAAGGGTTGGCAGCAAAATGCACAGTAGAATGGTTTCGGCACCTGCCGCGCTCGAACAGCTAGACGAGGAGGGTCTA TCTGCCTCTGTCGATACTCAGTCTTCTGCCATACCCGGTGTAATCTCCAGTACTGGTCTCGGATGCACTCATCTGTGGCTGCAGAGTAGAGTCCCATTAG GGTGCGTCCCTGCGAATTCAACGTTCACAATCAAGCTGGAGCTACTTCCTTTGACTGACGGTATAATCACACTCGACACGTTACAGATTGATGTCAAGGA AAAAGTTTGTTATGTGCATGTTTGGCAGGCTGAAGTTAATTTTCTCGGCGATCTTGTTCATGTCAACTTGGTGAAGCTTATTGGTTACTGCATTGAAGAT GATCAGAGGCTTTTGGTTTACGAGTTTATGCCTCGAGGAAGCTTGGAGAATCACTTATTTAGAAGGTCGTTGCCTCTTCCATGGTCCATAAGGATGAAAA TTGCACTCGGTGCTGCAAAGGGTCTTGCATTTCTTCACGAAGAAGCGGAAAGACCGGTTATTTATCGTGACTTCAAGACTTCTAATATCCTTCTTGATGC GGTATTGGATTACAATGCGAAACTTTCGGACTTTGGACTTGCTAAAGACGGACCTGAAGGAGACAAGACTCATGTATCCACTCGGGTCATGGGGACCTAT GGTTACGCAGCTCCCGAGTATGTAATGACAGGACATCTTACATCAAGAAGTGATGTCTACAGCTTCGGCGTAGTCCTTCTCGAAATGATCACTGGCCGAA GATCCATGGACAAGAACCGGCCAAACGGGGAACACAATCTGGTCGAATGGGCAAGGCCCCATCTCGGAGAGAGAAGGAGATTCTATCGACTGATAGACCC TCGACTCGAAGGCCATTTCTCGATAAAGGGCGCCCAGAAAGCCGCACAGCTAGCTGCTCTCTGCCTAACTCGTGACCCGAAAGCCAGGCCGCTGATGAGT GAAGTCGTTGAGGTTCTGAAGCCTCTCCCTACCATGAAGGACATGGCCAGCTCGTCGTATTACTTTCAGACTATGCAAGCTGACCGATCAGCCAGCAGCC CAAATTCGAGAAGTGGCGGCAGCAATCGGACGACAATGCAAGGAGGAGGAATGATGTCGCGACATCAACCGAGAAGCCTTTCGATACCGAATGGCTCACA TGCTTCTCCTTATCATCATCACCAGTTTCTTCCTCATCAGTCCCCGAAAACCGGTGCCAAACATTAG
AA sequence Show only first row Show all	>Lus10013273 pacid=23166630 polypeptide=Lus10013273 locus=Lus10013273.g ID=Lus10013273.BGIv1.0 annot-version=v1.0 MNFLLRSTSHHVVPEKVPAHEPAVDVQYMAKPTKTLEGLISEDPFPESPMARGREGEREEVGAENGNENDAVKKDSSVIEGHSDVLEDDGWITIPHKELP EDWSSSPDIQSLRSLDRSFVFPGEQVHILACLSASNQDTETITPFKVAAVISQSGRQSPERRNGNNLSDRTLEEGNLGGEDAEKLLQQKLAPEDVVSASE CVQIRLLADMDGQISFGSGTGKRTHLNALIDKGNFDANVAGGAARNSVNCWSLSNGDVVVLLQVNVGTHILRDPVIEILQFEKYQTSNLSSPSPNTLNFA NADPYGQLLKWLLPLDNTHYPPPRALSPPQRPPISVIAPTSQKPVSSGSQLFSHFRSYSMSSIPQASIPPTQPVKAQSSKPKFDIDEWEEHSTPKLRKDR QNVGDGIFSFRGVSLEQERFSVRCGLEGMYIPGKRWRRKLEIIQPVEIHSFAAHCNTDDLLCVQIKNISPAYLPDIVVYIDAITMVFNEAAKDGVPLSLP IACIEVGDDHCLPNLALRRGEQHSFILKPASSMWKSPKVPGERNFSSALRQSQLATETSNSNSNTDIYAIMVSCRCNYTESRLFFKQPTDWRPPISRDLL ISVAPELSLRSSPSDKVSHLPVQVLTLRASNLTSEDLTLTVLAPSSFTAPPSVGSLISTPATQIDTTIATRKRTERVGSKMHSRMVSAPAALEQLDEEGL SASVDTQSSAIPGVISSTGLGCTHLWLQSRVPLGCVPANSTFTIKLELLPLTDGIITLDTLQIDVKEKVCYVHVWQAEVNFLGDLVHVNLVKLIGYCIED DQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAVLDYNAKLSDFGLAKDGPEGDKTHVSTRVMGTY GYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAALCLTRDPKARPLMS EVVEVLKPLPTMKDMASSSYYFQTMQADRSASSPNSRSGGSNRTTMQGGGMMSRHQPRSLSIPNGSHASPYHHHQFLPHQSPKTGAKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17900			unknown protein		Lus10013273 [exp]	0	1
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	1.0	0.8539
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	2.0	0.8386
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	3.5	0.8525
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	4.4	0.8010
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	5.2	0.8389
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	5.9	0.8337
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	8.7	0.8110
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	8.8	0.7893
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	9.8	0.8345
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	10.8	0.8121

Compare expression of checked genes

Lus10013273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.