Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14430 300 / 4e-99 glyoxal oxidase-related protein (.1) AT3G57620 284 / 4e-93 glyoxal oxidase-related protein (.1) AT1G75620 276 / 4e-90 glyoxal oxidase-related protein (.1) AT1G19900 265 / 1e-85 glyoxal oxidase-related protein (.1) AT3G53950 230 / 3e-72 glyoxal oxidase-related protein (.1) AT5G19580 188 / 9e-56 glyoxal oxidase-related protein (.1) AT1G67290 186 / 6e-55 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030798 [exp] 446 / 6e-156 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 276 / 6e-90 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 239 / 8e-76 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 219 / 4e-68 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 198 / 2e-59 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 196 / 8e-58 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 187 / 7e-55 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 185 / 7e-55 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 187 / 3e-54 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034200 [exp] 348 / 1e-117 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 275 / 2e-89 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 272 / 3e-88 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 271 / 8e-88 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 270 / 2e-87 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 266 / 4e-86 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 235 / 5e-74 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 221 / 5e-69 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 209 / 9e-64 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 206 / 1e-62 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10013274 pacid=23166628 polypeptide=Lus10013274 locus=Lus10013274.g ID=Lus10013274.BGIv1.0 annot-version=v1.0 ATGGCGATCCCCCTATTCTTCATCTTGATCATAATCCTCCTCCTCCGATCTTCCACACACACGGCGGCCGCCACACCCGGCAGCGGCGGCAGCTGGGTTC TCCTCCACCGGAGCATTGGCATCTCGGCAATGCATATGCAAGTCTTGAGAAACAACAAGGTCATCATGTTCGACCGCACCGACTTCGGCAACTCCAACAT TTCTTTACCTGACGGGAAATGCAGATTCGACGAGACACTCTCTCCGGTTGACTGCTCGGCTCATTCTGTGCTGTACGACGTCACTTCAAACACCATCCGC CCGCTGCTGCTCCAAACGAACACCTGGTGCTCCTCGGGATCCCTCGACGCCGACGGCGTCCTCATCCAGACCGGCGGCCACGGCGAGGGGGAGAAGATCA TCCGCGCGTTCAGACCTTGCGACGCCGAACACGACAAGTCTTGCGACTGGATCGAGCTCTACGACACCAGCTTGATGAATCGGCGGTGGTACGCCTCCAA TCAGATCCTCCCCGACGGCAGGATCGTCATCGTCGGCGGTAGACGAGTATTCACCTACGAATTCTTCCCCAAATCAGCGTCATTATCCCAATTCGACAAC CGGACCCTCAATTTCCTGAGCCGAACCCGCGACCCGGATGAAGAAAACAACCTCTACCCTTTCCTCCATCTTTTACCCGACGGAAACCTCTTCATCTTCG CCAACAATCGCTCGATTCTATTTGATTACTCGAGAAACAGCGTCGTCAGAGAATATCCGCCGAATCCCGGCGGTGGGTCTCAGGCTTAA
AA sequence Show only first row Show all	>Lus10013274 pacid=23166628 polypeptide=Lus10013274 locus=Lus10013274.g ID=Lus10013274.BGIv1.0 annot-version=v1.0 MAIPLFFILIIILLLRSSTHTAAATPGSGGSWVLLHRSIGISAMHMQVLRNNKVIMFDRTDFGNSNISLPDGKCRFDETLSPVDCSAHSVLYDVTSNTIR PLLLQTNTWCSSGSLDADGVLIQTGGHGEGEKIIRAFRPCDAEHDKSCDWIELYDTSLMNRRWYASNQILPDGRIVIVGGRRVFTYEFFPKSASLSQFDN RTLNFLSRTRDPDEENNLYPFLHLLPDGNLFIFANNRSILFDYSRNSVVREYPPNPGGGSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	0	1
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	1.0	0.9859
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	2.8	0.9529
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	3.6	0.9273
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	3.9	0.9476
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	4.0	0.9435
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	6.6	0.9291
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	7.7	0.9420
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	8.0	0.9203
AT1G67040			unknown protein		Lus10033565 [exp]	10.4	0.9406
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	10.4	0.9287

Compare expression of checked genes

Lus10013274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.