Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 729 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 684 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 637 / 0 Major facilitator superfamily protein (.1) AT1G59740 388 / 4e-128 Major facilitator superfamily protein (.1) AT1G33440 372 / 8e-122 Major facilitator superfamily protein (.1) AT3G25260 361 / 1e-118 Major facilitator superfamily protein (.1) AT3G25280 354 / 5e-116 Major facilitator superfamily protein (.1) AT3G54140 343 / 4e-111 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 343 / 4e-111 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 342 / 1e-110 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030799 [exp] 1038 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 821 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 818 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 691 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 424 / 7e-142 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 405 / 5e-135 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 401 / 3e-133 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 395 / 4e-131 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10025881 [exp] 380 / 6e-126 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034300 [exp] 760 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 682 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 422 / 2e-141 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 411 / 3e-137 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 399 / 2e-132 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.003G000800 [exp] 382 / 1e-125 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 382 / 1e-125 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 379 / 2e-124 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.002G249100 [exp] 363 / 2e-119 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 344 / 3e-111 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10013276 pacid=23166613 polypeptide=Lus10013276 locus=Lus10013276.g ID=Lus10013276.BGIv1.0 annot-version=v1.0 ATGATGATGTCGGGTTGTTTACAGGAGCAGGAATTGGAAGGAGGAGGGAGATGGGAAGGGTATGTGGATTGGAGAAACAAGCCCGCAATTCGAGGCCGCC ATGGTGGCATGCTGGCTGCTTCCTTTGTTCTTGGGGCAGAGGTGATGGAGAACTTGGCGTTTCTTGCGAATGCGAGCAACTTGGTGATGTACATGGCGGA GTACATGCACTTCACACCGTCGAAGTCGGCGATTAACGTCACGAACTTCATGGGGACTGCTTTCCTTTTGGCACTCCTTGGTGGCTTCCTTTCTGATGCT TTCTTCACCACTTATCAGATTTACCTCATCAGTGCTGCCATTGAATTCCTGGGTTTGGTGATTCTAACAGTCCAAGCAAAGTCACCATCACTGAAGCCAC CAACTTGCACCATCAACATCAACAACACAGAGAATCCATGCCAGGAAGTTGAAGGAGGGCAAGCAGCAATGCTGTTCATAGGACTCTACTTGGTGGCACT TGGAGTTGGAGGGATCAAAGGCTCTTTACCTCCGCATGGCGCCGAGCAGTTCGACGACAGCACTCCAAAGGGAAGGAAGCAGAGGTCAACTTTCTTCAAC TACTTTGTGTTCTGCCTCTCCTGTGGTGCACTCATTGCTGTCACCTTTGTGGTTTGGGTTGAGGACAACAAAGGTTGGGAATGGGGGTTTGGTCTCTCCA CTATTGCCATATTTCTATCGGTTCCTATCTTCCTTGCTGGCTCATCTACTTACAGGAGCAAGATCCCTTCTGGTAGTCCTCTCACCACCATTTTTAAAGT TTTGGTGGCAGCAGCAATCAACAGATATTTGAACAGCAGGAGTCCAAGCAATGCCATAGCAAACCATGAAACCGAACAACACCAACAAGACATCATCAAC AACAATCACAAAACAACAATGCATCATCATCCAACAAAGAGCCTAAGCTGCCTCAACATTGCAGCAATGAAGAACAAGCCCTTCAATTGCACAATCCAGC AAGTCGAAGACGTGAAAATCGTAATCAAAATCCTCCCGATTTTCGCCTGCACCATCATTCTCAACTCCTGCCTAGCTCAGCTCTCAACATTCTCAGTCCA ACAAGCAGCAACCATGAACACCAACCTCCTAGGCACTTCATTCAAAGTCCCACCAGCTTCCCTCCCAGTCTTCCCGGTCATATTCATCATGATCCTCGCC CCAATCTACGACCACTTCATTGTCCCATTCGCCAGGCGAGTCACCAAGTCCGAGACCGGGATCACTCACCTCCAACGAATCGGGGTCGGACTAGTCCTCT CCATCGTAGCCATGGCAATTGCAGCACTGGTTGAGATCAAAAGGAAAAGCGATAACGATCCGTCCCGAATCACATTCTTGTGGATAGCATTGCAGTACTT GTTCTTGGGATCAGCTGACCTTTTCACATTGGCAGGGCTGCTTGAGTTCTTCTTCTCCGAGGCACCTTCCACCATGAGATCGCTCGCTACTTCCTTGTCG TGGGCCTCGCTGGCGATGGGGTACTACCTTAGCTCGGTGATCGTATCTGTGGTGAACGAGATCACGAGACGTGATGCTTGGTTGTTGGGGAAGGACATTA ATGAGTATCACCTTGAGAGATTCTACTGGCTTATGTGTGTTCTTAGTGCTTTGAACTTTGGACATTACCTTTTCTGGGCTTGCCGGTACAAGTACAGGTC TTCTTCATCTGATGCTACTGCTAGTGGTGGCAGCCATTGA
AA sequence Show only first row Show all	>Lus10013276 pacid=23166613 polypeptide=Lus10013276 locus=Lus10013276.g ID=Lus10013276.BGIv1.0 annot-version=v1.0 MMMSGCLQEQELEGGGRWEGYVDWRNKPAIRGRHGGMLAASFVLGAEVMENLAFLANASNLVMYMAEYMHFTPSKSAINVTNFMGTAFLLALLGGFLSDA FFTTYQIYLISAAIEFLGLVILTVQAKSPSLKPPTCTININNTENPCQEVEGGQAAMLFIGLYLVALGVGGIKGSLPPHGAEQFDDSTPKGRKQRSTFFN YFVFCLSCGALIAVTFVVWVEDNKGWEWGFGLSTIAIFLSVPIFLAGSSTYRSKIPSGSPLTTIFKVLVAAAINRYLNSRSPSNAIANHETEQHQQDIIN NNHKTTMHHHPTKSLSCLNIAAMKNKPFNCTIQQVEDVKIVIKILPIFACTIILNSCLAQLSTFSVQQAATMNTNLLGTSFKVPPASLPVFPVIFIMILA PIYDHFIVPFARRVTKSETGITHLQRIGVGLVLSIVAMAIAALVEIKRKSDNDPSRITFLWIALQYLFLGSADLFTLAGLLEFFFSEAPSTMRSLATSLS WASLAMGYYLSSVIVSVVNEITRRDAWLLGKDINEYHLERFYWLMCVLSALNFGHYLFWACRYKYRSSSSDATASGGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10013276 [exp]	0	1
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10041474 [exp]	7.7	0.6395
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10024505 [exp]	12.7	0.7123
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003397 [exp]	13.0	0.6374
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	17.8	0.6870
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	18.5	0.6754
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	20.7	0.6744
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	22.4	0.6867
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	24.3	0.6927
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10042752 [exp]	34.1	0.6558
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	34.5	0.6689

Compare expression of checked genes

Lus10013276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.