Lus10013279 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27070 196 / 1e-55 5'-AMP-activated protein kinase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030802 798 / 0 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1)
Lus10037220 280 / 2e-87 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
Lus10036706 276 / 2e-86 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G034600 228 / 8e-68 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1)
Potri.008G194300 223 / 7e-66 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1)
PFAM info
Representative CDS sequence
>Lus10013279 pacid=23166606 polypeptide=Lus10013279 locus=Lus10013279.g ID=Lus10013279.BGIv1.0 annot-version=v1.0
ATGCTTCCCGTCACAACCGTAGACTCCCATAATCTCTTCTTTCCTCCGCGTTTGAGCTCTCGTCAAACGCTCCGTACCACCACCACCACCACCACTCGTG
TTGTTCCTCTGCATTGTGCGGCGCTTTTGAAGGAAGGGTTTCTTGATGTTGGGAAGAGGAATGTAAGTGTTAGGGATTCTGTGGTGGAGTTTGGAGTTGG
GAAGTTTGTGAGGAGGTGTAGCCAAGACTGGGGGAGTGAAGGAGGAGATTACTCTGCATTGGAAGCTGAGGTTTTGGAGTTCATGAAGAGCTCTGAGGAT
CCTGAAGTGTTTCCGTCCAAGAAAGTGTTGATTGATGCGGGAAGAAGAGATCTTGTGGAAGGGATTGTGAGGAAAGGTGGGTGGATGGCTTCTGGATGGG
ATTCGGAAGAGGATGAAAGCCAAGGAGATGAAGTTTTGGACTGGAAGAATGAGACTGAATCAACGAATTTGATCTTGGAAGAGAATGAGAGCCAAGAAGT
GTTAAGTTCTGCTTCTTCATCCGGGAGATCACCAGAAAGTGCTGCTGAGTACGATTCAGGAATTGAAGGTCTGTTGAGTAGATTGAAGAGAGAAAGGAAT
TTGAAGTTAGGGATTAAATTGCCTAAGAGAGGAGAAGGAACTCATCCTGCATATGAGGAGCCTTGTACAGCTTCCAAATTTTCGACCGTAGCTGATATAA
AAAGAAACAGTGAACCTGCATCAGTAGAGCACAACAATGGCAAGACTAGTCACTTCAGCCAATTAACAAGTGTTGGTGGCTTAGAGAAATCACTTAAGCC
TGATGATTGGAGAACATGGAGTGCACGGAGGGGAGCATCTGCACTTGAAAATTTTGAAGGTGGTTCATTTGCAATCCAAAAGTTCAAAAGGATGCAATTT
TTGGATTCACCTAACCTCTTCTTTTGCTTACAATGTGCAGCCGGTGAAATAATTTCTGAAGAATCTAGAACTGAAGAAGTGGATGGGTTAGGATCTGAAG
CACTTCAGACAGTGGAGGGAAAGAAGACTGGAATTTTTGAAGCAGGTTTGAGTCCCATAAGAATTCGGCTTCGGCAAATGGAGTCTGAACTTTCAACTGT
ACTTCATGAGCTAAAATCAGCTAGTAATGGTGCTGCCTCACAAAACGTTGCTAGAAAATTTTGTTTAAGTGGGAAAAACAGAATCGAACTTTACAATTTA
CCCAAACTGGTTGAATTTGAGAACTTGCTCATTCAGTCATTATCTGATCTAAGTTTCACTCTACACCAGGCAAGCGAGAGCTCATGTGATGATCAGGCTA
TCGAGAGCTCATGCAATGATGAACTTCTGAAGCTGTATGATGATCTGGAATTCCGCGAAACTGAGATCATGCGTCACAAGGACAAGTTACGGTCTACCCG
AGCGAAGTTAGCAATTGAGGAAGGCAGAATGGCTCTTCGAACGATTGACGCACAAAGACTAGAAGAAGAGAAACGAAAAAGCGGAAGCAGTGCTTACAAG
GCTCTTCAGCTTTTAAGCACAGCGTACCTAGTTTGGACTAACAACGCCACAGAAGTGCTTGTGACTGGATCATTCGACGGATGGGCTACCAAGGTGAGAT
CTCATCTACCCCCTCTCAAGGCTCTTGCTATCCTCCTACTTATCATCTAA
AA sequence
>Lus10013279 pacid=23166606 polypeptide=Lus10013279 locus=Lus10013279.g ID=Lus10013279.BGIv1.0 annot-version=v1.0
MLPVTTVDSHNLFFPPRLSSRQTLRTTTTTTTRVVPLHCAALLKEGFLDVGKRNVSVRDSVVEFGVGKFVRRCSQDWGSEGGDYSALEAEVLEFMKSSED
PEVFPSKKVLIDAGRRDLVEGIVRKGGWMASGWDSEEDESQGDEVLDWKNETESTNLILEENESQEVLSSASSSGRSPESAAEYDSGIEGLLSRLKRERN
LKLGIKLPKRGEGTHPAYEEPCTASKFSTVADIKRNSEPASVEHNNGKTSHFSQLTSVGGLEKSLKPDDWRTWSARRGASALENFEGGSFAIQKFKRMQF
LDSPNLFFCLQCAAGEIISEESRTEEVDGLGSEALQTVEGKKTGIFEAGLSPIRIRLRQMESELSTVLHELKSASNGAASQNVARKFCLSGKNRIELYNL
PKLVEFENLLIQSLSDLSFTLHQASESSCDDQAIESSCNDELLKLYDDLEFRETEIMRHKDKLRSTRAKLAIEEGRMALRTIDAQRLEEEKRKSGSSAYK
ALQLLSTAYLVWTNNATEVLVTGSFDGWATKVRSHLPPLKALAILLLII

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27070 5'-AMP-activated protein kinas... Lus10013279 0 1
AT2G01130 DEA(D/H)-box RNA helicase fami... Lus10007938 6.3 0.7873
AT5G13260 unknown protein Lus10002574 12.4 0.7708
AT4G21065 Tetratricopeptide repeat (TPR)... Lus10013319 14.2 0.7592
AT5G23200 unknown protein Lus10010192 19.6 0.7507
AT3G12350 F-box family protein (.1.2) Lus10010606 24.4 0.6980
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Lus10042865 33.8 0.7386
AT5G18590 Galactose oxidase/kelch repeat... Lus10043420 33.9 0.7058
AT4G15240 Protein of unknown function (D... Lus10027152 35.1 0.7438
AT3G13690 Protein kinase protein with ad... Lus10001996 47.6 0.7286
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Lus10028812 55.5 0.7244

Lus10013279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.