Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59710 219 / 4e-71 Protein of unknown function (DUF569) (.1) AT1G27100 186 / 6e-56 Actin cross-linking protein (.1) AT3G28630 179 / 2e-55 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT1G69890 172 / 3e-53 Protein of unknown function (DUF569) (.1) AT3G01311 152 / 3e-45 Protein of unknown function (DUF569) (.1) AT1G69900 77 / 2e-16 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030804 [exp] 370 / 1e-130 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 224 / 3e-73 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10001124 [exp] 165 / 2e-49 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10037230 [exp] 166 / 3e-49 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10015346 [exp] 163 / 8e-49 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10036693 [exp] 71 / 5e-15 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 43 / 0.0001 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 39 / 0.0003 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 265 / 3e-86 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 240 / 7e-77 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.004G130200 [exp] 182 / 6e-55 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.017G075900 [exp] 179 / 7e-54 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10013281 pacid=23166594 polypeptide=Lus10013281 locus=Lus10013281.g ID=Lus10013281.BGIv1.0 annot-version=v1.0 ATGACCGGGCGGAAAGTCCTGCAGACTCTTCCCCGGCGGCTGGACTCGTCGGTGGAGTGGGAGCCGGTCAGAGAAGGGTACAGTGCCCGGATCAGGCTAA AGACACGGTACGGGAATTTCCTGAGGGCGAACGGGAGGTTGCCGCCGTGGAGGAACTCTGTTACTCATGATATTCCTCACCGGACGAGTACGCAGGACTG GATTGTTTGGGATGTTGACGTTGTTGAGATTAGGGAGAGTGAAAAGTCAACGCCGGCGGCGGAGACGAAGCAGCTGGATCATGTGGATTCGTTGGATTTC GAGGAAACGGGCTCGCCGGCTTACTCTGTTCCCGTTAGGCCTCCGGTTACTTTTGAGAGATTGGAGTCGACTTATTCGAACGTTGGGTCGCCACCGAAGA CGGAAGGGAGGACGATATACTACCATGTGGCAGACGAGAGCGGAGATGTTGACGACGACGTGGAGGAAGGGTATTCAATGAGTTTCAAAGGGAACGGAGT GGAAGAGCTGACCGAAAAGTTGAAGGAAGTGATCGGATTACGCGAGATAGTGGTGTGTTCGAGGAGCCCTTTGAATGGAAAGCTTCACCCTCTTCGATTG CAGCTTCCTCCTAACAATGCCGATATGCATGTCATTGTGGTGCCTTCCTCGTCCAGAGATTTCTAA
AA sequence Show only first row Show all	>Lus10013281 pacid=23166594 polypeptide=Lus10013281 locus=Lus10013281.g ID=Lus10013281.BGIv1.0 annot-version=v1.0 MTGRKVLQTLPRRLDSSVEWEPVREGYSARIRLKTRYGNFLRANGRLPPWRNSVTHDIPHRTSTQDWIVWDVDVVEIRESEKSTPAAETKQLDHVDSLDF EETGSPAYSVPVRPPVTFERLESTYSNVGSPPKTEGRTIYYHVADESGDVDDDVEEGYSMSFKGNGVEELTEKLKEVIGLREIVVCSRSPLNGKLHPLRL QLPPNNADMHVIVVPSSSRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	1.4	0.8881
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	1.7	0.9062
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	2.0	0.8755
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	2.6	0.8592
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	4.5	0.8686
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	5.5	0.8497
AT2G46080			unknown protein		Lus10005122 [exp]	5.5	0.8866
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	6.9	0.8640
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	8.0	0.8230
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	8.5	0.8560

Compare expression of checked genes

Lus10013281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.