Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10370 216 / 2e-71 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G10360 204 / 8e-67 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1) AT1G59700 168 / 3e-52 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G69920 162 / 5e-50 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT1G27130 162 / 6e-50 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G27140 154 / 1e-46 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G69930 151 / 1e-45 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT1G59670 145 / 1e-43 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT2G29420 119 / 2e-33 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT2G29450 114 / 2e-31 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030806 [exp] 330 / 5e-116 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030805 [exp] 303 / 2e-105 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10036688 [exp] 248 / 5e-84 AT1G10370 281 / 1e-96 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10037234 [exp] 244 / 2e-82 AT1G10370 285 / 2e-98 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10007897 [exp] 123 / 9e-35 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10009746 [exp] 118 / 2e-34 AT1G10370 96 / 1e-25 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10029518 [exp] 115 / 5e-33 AT1G69930 96 / 3e-25 glutathione S-transferase TAU 11 (.1) Lus10040727 [exp] 114 / 3e-31 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 112 / 9e-31 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035500 [exp] 224 / 1e-74 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G032800 [exp] 224 / 1e-74 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.008G175100 [exp] 139 / 3e-41 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 132 / 1e-38 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.010G060900 [exp] 130 / 9e-38 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 128 / 5e-37 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 127 / 1e-36 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G118500 [exp] 122 / 1e-34 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 120 / 8e-34 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.012G052200 [exp] 120 / 1e-33 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013282 pacid=23166586 polypeptide=Lus10013282 locus=Lus10013282.g ID=Lus10013282.BGIv1.0 annot-version=v1.0 ATGGCCACCAACAGCATCAAGAGCGACGTGAAGCTAATCGGAGCCCGGCTGAGTCCCTTCGTGATGCGTCCCCGAGTCGCACTCAACATCAAATCGGTCG AGTACGAGTTCCTGGAAGAGCAATTTGGTTCGAAGAGCGAGCTCCTCCTCAAATCCAACCCTGTTCACAAAAAGATCCCGGTCCTCCTCCACAAGGACAC ACCCATCTGCGAGTCCAACATCATCGTCGAGTATATTGACGAGTTGTTCCCAAAAGTAAGGGCGGCACTCATAGCAACAACCGAAGAGGCCAAAACCACA GCAACGAACCAGCTCATCGAAGTGCTTGGTCTGCTCGAACAAGCTTACAATGACATCAGCAGAGGCAAAGACTTCTTCGGAGGCGACACGATCGGGTTCC TCGACATTGCCCTCGGGGGCATGCTGAGCTGGATCAGAGGCTTGCAAGTAATGATTGGGGTGAAGCTACTGGACGAGGAGCAAACACCTGGTCTGCTGAA GTGGTCGGAGAATTTTGCGGCGGATCCTGCTGTTAAGGATATCCTGCCCGAGACCGAGGAGATCGTCGAGTTTGCCAAGGTTCTTGTGCCCAAACTCAAA GGTGCCTCAGCTTGA
AA sequence Show only first row Show all	>Lus10013282 pacid=23166586 polypeptide=Lus10013282 locus=Lus10013282.g ID=Lus10013282.BGIv1.0 annot-version=v1.0 MATNSIKSDVKLIGARLSPFVMRPRVALNIKSVEYEFLEEQFGSKSELLLKSNPVHKKIPVLLHKDTPICESNIIVEYIDELFPKVRAALIATTEEAKTT ATNQLIEVLGLLEQAYNDISRGKDFFGGDTIGFLDIALGGMLSWIRGLQVMIGVKLLDEEQTPGLLKWSENFAADPAVKDILPETEEIVEFAKVLVPKLK GASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10029827 [exp]	3.5	0.9402
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	10.4	0.8973
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10037993 [exp]	10.6	0.8561
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	16.4	0.8704
					Lus10015147 [exp]	17.3	0.8426
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	18.0	0.8932
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	23.5	0.8702
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	25.6	0.8965
					Lus10037654 [exp]	28.0	0.7761
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	28.2	0.8905

Compare expression of checked genes

Lus10013282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.