Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 786 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G01110 343 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 342 / 1e-107 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 312 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 308 / 4e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 308 / 4e-96 RPF2 rna processing factor 2 (.1) AT3G22470 305 / 4e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 305 / 5e-95 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 303 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 301 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007468 [exp] 327 / 5e-102 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 320 / 3e-99 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 323 / 2e-98 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 318 / 2e-98 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 311 / 4e-96 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 305 / 7e-94 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 286 / 2e-85 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 285 / 2e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 284 / 2e-84 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035700 [exp] 899 / 0 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G276500 [exp] 351 / 2e-111 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 330 / 4e-103 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 313 / 3e-97 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 303 / 4e-94 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 301 / 2e-93 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 300 / 3e-93 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G098400 [exp] 303 / 1e-92 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 298 / 2e-92 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 306 / 6e-92 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013283 pacid=23166604 polypeptide=Lus10013283 locus=Lus10013283.g ID=Lus10013283.BGIv1.0 annot-version=v1.0 ATGAGAATTAAGAACGATTATGAATTGGTTTTGGATTTCTTTAACTGGGTTTGCCTTCAGAGAGATCCAAACCTTGAAGCTCGTTGTATAGTAATTCAAC TTGCTGCTGCCTCTAAGGATCTAAAGGCAACCGATGAGCTTATCCGTGACTTTTGGACGAAGCTTAATTTGGACGTTGATCATGCTTTCACTCTTTTTGT AGACCGGATGATATACACATATAAAGACTGGGGTTCGGATCCCCATGTATTTGATGTATTCTTTCAAGTTCTTGTCGAAGTCGGGTTGCTTCCTGAAGCA AAAAGCCTCTTTGGAAAATTGCTGAACTATGGGATAGTCGTTTCAGTCGATTCATGTAACTTGTATTTGTCTCAGTTGTCGAACAGCCCACAAGGGCTCA TAATGGCTTTGCAGATCTATTGTGAGTTCTCTCAAGCTGGTGTTTGTTGGAACACTGCATCATACAATAAAATTATGAGCACGCTTTGTCAGTTAGGTAG ATTGAAGGAGGCACATACTTTGCTACTACAAATGGAGTTGAAGGGATTTCCTCCTGATGTTGTAAGTTATAGCACCGTAATAAATGGCTATTGTGAAAGT GGAGAATCAGAAGAAGTGCTGCACCTTATTGAAGAAATGCAGCTTAAGGGATTGAAGCCGAACTTGTATACTTATAATAGCATTATGCTTCTTCTGTTTA CGACTGGAAATGTCAGTGATATAGATAAAGTCTTGCAGGAGATGATACACCAGGGAGTATTTCCCGACAATGTGGTCTATACGACGCTGATTCATGGATT TTGCAGGCTTGGGAATACTCAGGCTGCTTATATGTTATTCCGAGAGATGCATGCACAAAGGGTTATTCCTGACTTGATAGCTTACACTGCTATCATCTTT GGATTCTCTCAAAATGGAAACATGGTGGAAGCTGAAAAGCTCTTTAACGAAATGCTTAATCAAAGAGTTCGGCCAGATGAGGTAACATATTCAGTACTTG TTGATGGATACTGCAAATTAGGTGAGATGAGGAAGGCCTTTGCCCTTCACAATCAGATGGTTCGACTTGGAGTTGTGCCAAACGTTGTTACATACACTGC ACTCACTGACGGCCTTTGTAAAATCGGGGAAGTCGATACAGCAAATGAGCTTCTACAGGAGATGATTACGAAGGGTCTGAAACCGAATGTATGGACTTAT AACTCAATGGTAAATGGTCTTTGTAAGATAGGGAACCTTTCACAAGCACTGAAGCTGAAAGAAGAAATGGCAGTAGCGGGAATTCATCCTGATACCGTCA CTTACACTACTTTAATGGATGCTTACTGTAAAATGGGAGAGATGGATAAGGGTAAAGAGCTTCTGCAAGAGATGCTGAAAAGAGGGCTACAGCCTACAGT TGTTACATTCAACGTGCTTATGAATGCATTTTGCCAGTCAGGAAGGGTTGAAGATGGTGAAAGGCTACTGGAATGGATGTTGAATAGAGGGGTGATGCCG AATGCCACGACTTATAACTCTCTCGTCAAGCAGTACTCGATAAGAAACAATATGCACCGAACGACCGAGATTTTCAGGTCAATGCAAGCTGGTGGAGTGA TGCCTGATTGTAACACTTACAATATTTTGATCAGAGGACACTGTAAGGCCAGGAATATGAAAGAAGCGTGGTTTCTGTACAAAGCAATGTCCAAGAAAGG ATATAGTGTTGCGGCTACTTCATATAATGCCCTCATCAAAGGATTCTTAAAGAGGAAGAAACCTTTGGAAGCAAGAAAAGTATTTGAAGACATGAGAAAA GAAGGGTTGGCTCCTGATACAGACGTGTACAATTTACTTGTTGGTGTAAATTATGAAGAGGGGAACAAAGGAAGCAGTTTTGAGCTTTTTGATGAAGCTA TAGAGGAGCTTGTGGGGGGCTCCAACAATTAA
AA sequence Show only first row Show all	>Lus10013283 pacid=23166604 polypeptide=Lus10013283 locus=Lus10013283.g ID=Lus10013283.BGIv1.0 annot-version=v1.0 MRIKNDYELVLDFFNWVCLQRDPNLEARCIVIQLAAASKDLKATDELIRDFWTKLNLDVDHAFTLFVDRMIYTYKDWGSDPHVFDVFFQVLVEVGLLPEA KSLFGKLLNYGIVVSVDSCNLYLSQLSNSPQGLIMALQIYCEFSQAGVCWNTASYNKIMSTLCQLGRLKEAHTLLLQMELKGFPPDVVSYSTVINGYCES GESEEVLHLIEEMQLKGLKPNLYTYNSIMLLLFTTGNVSDIDKVLQEMIHQGVFPDNVVYTTLIHGFCRLGNTQAAYMLFREMHAQRVIPDLIAYTAIIF GFSQNGNMVEAEKLFNEMLNQRVRPDEVTYSVLVDGYCKLGEMRKAFALHNQMVRLGVVPNVVTYTALTDGLCKIGEVDTANELLQEMITKGLKPNVWTY NSMVNGLCKIGNLSQALKLKEEMAVAGIHPDTVTYTTLMDAYCKMGEMDKGKELLQEMLKRGLQPTVVTFNVLMNAFCQSGRVEDGERLLEWMLNRGVMP NATTYNSLVKQYSIRNNMHRTTEIFRSMQAGGVMPDCNTYNILIRGHCKARNMKEAWFLYKAMSKKGYSVAATSYNALIKGFLKRKKPLEARKVFEDMRK EGLAPDTDVYNLLVGVNYEEGNKGSSFELFDEAIEELVGGSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	2.4	0.8823
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	2.4	0.8536
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	3.0	0.8491
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	4.9	0.8434
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	6.7	0.8301
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	8.0	0.8171
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	8.8	0.7838
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	11.2	0.8185
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	11.6	0.8139
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10008618 [exp]	12.4	0.7706

Compare expression of checked genes

Lus10013283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.