Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59640 287 / 6e-98 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G62610 203 / 9e-65 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 160 / 2e-46 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 160 / 5e-46 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 157 / 7e-45 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 153 / 2e-44 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 147 / 2e-42 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G10120 148 / 3e-42 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 143 / 3e-41 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G34530 144 / 5e-41 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030807 [exp] 476 / 1e-172 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10033120 [exp] 245 / 2e-81 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036659 [exp] 235 / 5e-77 AT5G62610 256 / 3e-85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 164 / 3e-47 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 162 / 2e-46 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 155 / 2e-45 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002337 [exp] 154 / 3e-44 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 147 / 9e-43 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10030581 [exp] 155 / 2e-42 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040000 [exp] 305 / 4e-105 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 271 / 1e-91 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.012G072700 [exp] 259 / 8e-87 AT5G62610 228 / 4e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G068100 [exp] 251 / 2e-83 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 172 / 6e-50 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 165 / 4e-47 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 164 / 6e-47 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 159 / 3e-45 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G121850 [exp] 152 / 8e-44 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G146500 [exp] 150 / 6e-43 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013284 pacid=23166580 polypeptide=Lus10013284 locus=Lus10013284.g ID=Lus10013284.BGIv1.0 annot-version=v1.0 ATGGATCCGCGAGGGTTAATGAACGACGAGTCGTTTAACCTGGCGGAGATCTGGCAGTTTCCGCTGAATGGGAATGGGAGGGGCCAGTTTGGGCAGAGCT TGGCTCATTTCGCTGATTCTGCTACTGGTAGGGATAGTGATCTGGTCAATTTGGAGTCCAGAGGTGGGTTGAGGAAGCGATTGGATTTGGAGGATGAGTC TGGGAAGGGCGTGTCTACTAGCAATGGCAATGGGAGCGGGAATGGATTGAGTGAGAGTGATGGGAAACGGCTCAAAAGATCAGCTAGCAGAGATGATAAT TGCGAGTCCAAAGTTGAAACAGAAGAACTCAGTTCAGGGAAGCCAGTGGAACAAAAGGGTCAACCATCGGAGCCTCCTAAACAGGATTACATCCACGTTC GAGCTAGGCGAGGTCAAGCTACTGATAGCCACAGCCTAGCAGAAAGAGCAAGGAGAGAAAAAATAAGTGAAAGGATGAAGATTCTTCAGGATCTAGTCCC TGGTTGCAACAAGGTAATTGGCAAAGCTCTCGTCCTTGATGAGATTATCAATTATGTCCAATCGTTGCAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTA GAGGCAGTTAATTCCAGGATGACTCCAGGAATCGATGTCTATCCTTCTAAAGACTTTGGCCAACAAACATTCGATAATTCCGGAATGGCTTATGGTTCGC AAACCACAAGGGAATACAGCCGGGGAGCTTCGCCAGAATGGTTGCACATGCAGATCGGTAGCGGTTTCGAAAGAACATCGTGA
AA sequence Show only first row Show all	>Lus10013284 pacid=23166580 polypeptide=Lus10013284 locus=Lus10013284.g ID=Lus10013284.BGIv1.0 annot-version=v1.0 MDPRGLMNDESFNLAEIWQFPLNGNGRGQFGQSLAHFADSATGRDSDLVNLESRGGLRKRLDLEDESGKGVSTSNGNGSGNGLSESDGKRLKRSASRDDN CESKVETEELSSGKPVEQKGQPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVEFLSMKL EAVNSRMTPGIDVYPSKDFGQQTFDNSGMAYGSQTTREYSRGASPEWLHMQIGSGFERTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	0	1
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	1.0	0.8411
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	3.5	0.7794
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	6.5	0.7968
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	13.5	0.7628
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	14.1	0.7343
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	14.1	0.7476
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	19.9	0.7662
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	25.2	0.7636
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	26.2	0.7356
AT1G34770			unknown protein		Lus10033452 [exp]	26.7	0.7352

Compare expression of checked genes

Lus10013284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.