Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69935 81 / 5e-19 SHW1 short hypocotyl in white light1 (.1) AT4G33780 72 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030808 [exp] 228 / 4e-76 AT1G69935 107 / 5e-29 short hypocotyl in white light1 (.1) Lus10035665 [exp] 75 / 2e-16 AT4G33780 157 / 2e-48 unknown protein Lus10037250 [exp] 60 / 8e-11 AT4G33780 150 / 9e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190900 [exp] 109 / 1e-29 AT1G69935 91 / 1e-22 short hypocotyl in white light1 (.1) Potri.001G289600 [exp] 72 / 1e-15 AT4G33780 150 / 9e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013285 pacid=23166646 polypeptide=Lus10013285 locus=Lus10013285.g ID=Lus10013285.BGIv1.0 annot-version=v1.0 ATGATGCTAAAGCTTGCAGCTCCGCTTCCCTCCCAGTCCCTCCGTCTCCGGCCATCCGCTGCCGCCTATCTCCCCCGCCGTCCTCCAAACCTCTCCTCGC CTCTCCTCCCCCGCCGCAAAACCACTACAACCGTCATTTGCTATGGCAAGCTGGACGGCTTGTACGGGGAGAATCCGGACCCAGTTGAGAAGGGAACTGA AGCTTTCTTTGAAGCGATTATGGGAGGAGGAATTGATGACGACGATGATAGGCTTGACGATTATGATGATGATGATGAAGAAGAAGAAGAGACAGAGAGC AGTATCGATTTGTTCATCAGATTCTTGCAGAGCTCGTTGAAGAAAGTTTCCAAGCGTGCTAAGAAGGCTTCTCGCTCTGTTCTCCCTTCTGTCATCTCCC CACAATTGGTTTCATTTGCGGTTGATGGGGTGCTGATTCTGACTGTACTCTTCATTTTCAAATCACTTCTTCAGGTGTTCTGCACCCTTGGAAGCACTGT TTTCGCGGCGATACTGCTAGTTCGGGTTGTCTGGGCAGTGCTTTCCTACTTCCAATCGAATGGGAATGATGGCAGAACATCCTCCTCTGGTACTAGACAG GCAGTGATATAA
AA sequence Show only first row Show all	>Lus10013285 pacid=23166646 polypeptide=Lus10013285 locus=Lus10013285.g ID=Lus10013285.BGIv1.0 annot-version=v1.0 MMLKLAAPLPSQSLRLRPSAAAYLPRRPPNLSSPLLPRRKTTTTVICYGKLDGLYGENPDPVEKGTEAFFEAIMGGGIDDDDDRLDDYDDDDEEEEETES SIDLFIRFLQSSLKKVSKRAKKASRSVLPSVISPQLVSFAVDGVLILTVLFIFKSLLQVFCTLGSTVFAAILLVRVVWAVLSYFQSNGNDGRTSSSGTRQ AVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	0	1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	3.7	0.9207
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	7.3	0.9137
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	15.1	0.8671
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	15.9	0.8927
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	16.1	0.9045
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	16.6	0.9100
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	19.0	0.9034
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	19.0	0.8814
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	19.4	0.8992
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	21.5	0.9012

Compare expression of checked genes

Lus10013285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.