Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59820 1901 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G25610 938 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 937 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 930 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G17500 927 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 924 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 915 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 914 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 899 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 899 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030809 [exp] 2344 / 0 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1) Lus10036682 [exp] 2158 / 0 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10019152 [exp] 964 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 922 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 913 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 908 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 904 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 903 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 893 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039900 [exp] 2068 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 2033 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.010G132700 [exp] 949 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 946 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 933 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 907 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 895 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 868 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 853 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G109200 [exp] 642 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10013286 pacid=23166661 polypeptide=Lus10013286 locus=Lus10013286.g ID=Lus10013286.BGIv1.0 annot-version=v1.0 ATGAGCGGCGGTGGAGGAGGATGGGAGAGGATAAGGTCAACGAGAGGAGGGAGGTTGTCGAGAGATGTGAGTTTGACGGGTCGAACGACGAGGACGGTGA GGCTGGGCAGAGTGCAGCCGCAGGCGCCTGGTTACCGGACAATCTTCTGCAATGATCGCGAGGCGAATCTCCCAGTACGATTCAAGGGAAACTCTGTATC GACTACAAAGTACAACTTTTTAACTTTTCTACCAAAAGGGTTGTTTGAACAGTTCAGACGGGTGGCTAACTGCTACTTTCTCTTGATCTCTATTCTCTCT ATGACACCTATCAGTCCCGTTAATCCAGTGACAAACGTTGTCCCCCTTAGCTTGGTGCTTTTTGTTTCTCTTGTAAAGGAGGCATTTGAGGACTGGAAAC GCTTGCAGAATGATATGGTGATAAACAATAATCCTGTAGATGTGCTCCAAGATCAGCGATGGGTAACTATTCCTTGGAAGAAGTTGCAAGTTGGAGACAT TGTTAAGATTAAGCAGGATGGATTCTTTCCAGCAGATTTGCTTTTCCTAGCTAGTACAAATGCAGATGGTGTCTGTTATATTGAGACTTCAAACTTGGAC GGTGAAACAAACTTGAAGATTAGAAAAGCTGTTGAAAGGACCTGGGATTATTTGACTCCAGAGAAAGCGGTTGAATTTAAAGGTGAAGTGCAGTGTGAGC AGCCGAACAATTCCCTGTATACCTTCACTGGCAATCTTATTATTGAGAACCAAACACTTCCTCTCTCCCCAAACCAGCTTTTGCTTAGGGGTTGCAGTCT AAGGAATACTGAATACATTGTAGCGGCTGTTATATTCACTGGTCACGAAACCAAGGTAATGATGAACTCTATGAATGTTCCTTCTAAACGGAGTACATTG GAGAGAAAACTTGACAAACTTATTCTTGCGCTCTTCGGAACACTCTTCGCAATGTGCCTTATTGGAGCCATAGGAAGTGGAATATTCATAAGCAGTGACT ACTACTACCTAGAGTTAAAAAGAGGAGTAGGATTGGAGTTTGACCCTACCAGCCGTCTTTCGGTTGCCATTCTGACACTATTTACCCTGATCACTCTATA TTCAACAATCATTCCTATCTCCTTATACGTCTCCATTGAGATGATCAAGTTTATCCAGTGTGCTCAGTTTATCAACAAGGATTTGCATATGTATCATGTT GAAAGCAACACCCCAGCATTGGCTCGGACTTCGAATTTAAACGAGGAACTTGGGCAGGTTGAATTCATATTCTCTGACAAAACTGGAACCTTAACAAGGA ATTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTTTATGGAACTGGCATCACTGAAATAGAGCTGGGAGGGGCACAAAGGAGCGGTGCCAAAAT TCAAGATGTGCTGATTCCAGATCCTGCGCCAAGATCATCCCAGACTGTTCGTGAGAAAGGGTTCAATTTTGATGATTCTAAGATCATGAGGGGTGCTTGG AGGAATGAGCCTAATCCGGACATGTGTAAGGAATTTTTCAGATGCCTTGCTATATGCCATACTGTACTTACTGAAGGTGCTGAGTCCCCTGACAAGATTA CATACCAAGCTGCATCTCCTGACGAGGCTGCTCTTGTCACTGCTGCAAAAAATTTTGGTTTCTTCTTTTACAGACGTACACCTACTATGATATATGTCCG TGAGTCTCACGCAGAGAAGATGGGAACAGTTACTGATGTTCCATACGAGATTCTGAATGTTCTCGAGTTCAACAGCACAAGGAAGCGCCAGTCTGTTGTT TGTAGGTATCCTGATGGTAGACTCGTATTGTACTGCAAGGGTGCTGATACTGTAATTTACGAAAGATTGGCTGATGGAAATGATGGCCTTAAGAAGATAA CACGGGGGCACTTGGAAAAATTTGGATCAGCTGGATTGCGTACTCTCTGCCTTGCCTATAAAGATTTACAGCCGGAAACATATGAAAGCTGGAATGAGAT GTTTATCCAAGCTAAATCTTCTCTTAGAGACCGTGAAAAGAAGCTAGACGAGGTAGCAGAACTTATAGAGAAGGATCTTATCTTAATTGGGTCGACAGCT ATAGAAGACAAACTTCAAGAAGGTGTACCAGCTTGTATTGAGACGCTTTCTAAAGCTGGAATTAAGATTTGGGTCCTGACAGGGGACAAAATGGAAACTG CCATAAATATTGCTTACGCTTGCAACTTGATTAACAATGATATGAAACAGTTCATTATTAGTTCAGAAACTGATGCTATTCGAGAAGTGGAAGAAAAGGG TGACCAGGTAGAAATTGCACGGTTTATGAAAGAAGAAGTCAAAAGAGAGCTCAAAAGGTGTCTTGAAGAAGCACAACACTCTTTGCGCACTGTAGCTGGA CCAAAGTTGGCACTCATCATAGATGGAAAATGTTTGATGTATGCATTGGACCCAACCTTGCGAGTAATGCTGCTGAATTTGAGTCTGAACTGCAATTCCG TGGTTTGTTGCCGGGTTTCCCCTTTACAGAAAGCTCAGGTTACCAGTCTGGTCAAGAAAGGTGCGAAGAAGATAACCCTTAGCATTGGTGATGGTGCTAA TGATGTTAGCATGATTCAAGCTGCTCATATCGGTGTCGGAATAAGTGGGATGGAGGGTATGCAAGCAGTCATGGCTAGTGACTTTGCGATTGCCCAGTTC CGGTTCCTTACAGATTTACTTCTTGTTCATGGACGGTGGTCTTACCTCAGGATATGCAAGGTCATTACTTACTTCTTTTACAAGAATCTTACCTTCACCC TCACGCAATTTTGGTTCACCTTTTACACTGGCTTCTCTGGTCAAAGATTTTATGACGATTGGTTCCAGTCATTGTATAATGTCATCTTTACCGCTCTTCC TGTCATAATCGTCGGGCTTTTCGACAAGGCAAGTATCTTACGAGATGTTAGTTCGTCGTTGTCGAAGAAGTACCCTCAACTTTACAAGGAGGGAATAAAG AACATGTTCTTCAAATGGCGAGTTGTGGGGACATGGGCTTTCTTCTCCGTCTACCAATCTCTCATCTTTTATCACTTTGTGACGATTTCCGCCACGAGTG GTAAGAATTCGTCGGGGAGGATGTTTGGATTGTGGGATGTCAGCACGTTGGCCTTCACCTGTGTTGTAATCACTGTTAATTTGCGGCTTATAATGATGTG TAATTCGATCACGAGATGGCATTACATTAGTGTCGGAGGAAGTATTCTCGCATGGTTTGTCTTCATCCTTATATACTCGCTTCTACGGGAGAACGTTTTC TTTGTGATTTATGTTCTTATGGGCACATTCTACTTTTACCTCACAATAATTCTTGTCCCTATCGTCGCCCTTCTCGGAGACTTCATCTATCAAGGGGTCC AGAGGTGGTTCTTCCCGTACGACTACCAGATCGTACAAGAAATGCACAAGGACGACCCCGAAGACAACTCGAGGACTGGATTGCTGGAGATAGGCAACCG ACTCACCCCCCAGGAGGAAAGAAGCTTCGCCGTAGCTCAACTCCCACGGGAGCTATCGAAACACACGGGATTCGCATTCGATTCACCCGGTTACGAGTCG TTCTTCGCGGGGCAGCTCGGTATCCACGCTCCCCAGAAGGCATGGGATGTTGCCAGAAGAGCCAGCATGCGTGGGAAGCCCAAGGAATCAAAGAAGCACT GA
AA sequence Show only first row Show all	>Lus10013286 pacid=23166661 polypeptide=Lus10013286 locus=Lus10013286.g ID=Lus10013286.BGIv1.0 annot-version=v1.0 MSGGGGGWERIRSTRGGRLSRDVSLTGRTTRTVRLGRVQPQAPGYRTIFCNDREANLPVRFKGNSVSTTKYNFLTFLPKGLFEQFRRVANCYFLLISILS MTPISPVNPVTNVVPLSLVLFVSLVKEAFEDWKRLQNDMVINNNPVDVLQDQRWVTIPWKKLQVGDIVKIKQDGFFPADLLFLASTNADGVCYIETSNLD GETNLKIRKAVERTWDYLTPEKAVEFKGEVQCEQPNNSLYTFTGNLIIENQTLPLSPNQLLLRGCSLRNTEYIVAAVIFTGHETKVMMNSMNVPSKRSTL ERKLDKLILALFGTLFAMCLIGAIGSGIFISSDYYYLELKRGVGLEFDPTSRLSVAILTLFTLITLYSTIIPISLYVSIEMIKFIQCAQFINKDLHMYHV ESNTPALARTSNLNEELGQVEFIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIELGGAQRSGAKIQDVLIPDPAPRSSQTVREKGFNFDDSKIMRGAW RNEPNPDMCKEFFRCLAICHTVLTEGAESPDKITYQAASPDEAALVTAAKNFGFFFYRRTPTMIYVRESHAEKMGTVTDVPYEILNVLEFNSTRKRQSVV CRYPDGRLVLYCKGADTVIYERLADGNDGLKKITRGHLEKFGSAGLRTLCLAYKDLQPETYESWNEMFIQAKSSLRDREKKLDEVAELIEKDLILIGSTA IEDKLQEGVPACIETLSKAGIKIWVLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVEEKGDQVEIARFMKEEVKRELKRCLEEAQHSLRTVAG PKLALIIDGKCLMYALDPTLRVMLLNLSLNCNSVVCCRVSPLQKAQVTSLVKKGAKKITLSIGDGANDVSMIQAAHIGVGISGMEGMQAVMASDFAIAQF RFLTDLLLVHGRWSYLRICKVITYFFYKNLTFTLTQFWFTFYTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKASILRDVSSSLSKKYPQLYKEGIK NMFFKWRVVGTWAFFSVYQSLIFYHFVTISATSGKNSSGRMFGLWDVSTLAFTCVVITVNLRLIMMCNSITRWHYISVGGSILAWFVFILIYSLLRENVF FVIYVLMGTFYFYLTIILVPIVALLGDFIYQGVQRWFFPYDYQIVQEMHKDDPEDNSRTGLLEIGNRLTPQEERSFAVAQLPRELSKHTGFAFDSPGYES FFAGQLGIHAPQKAWDVARRASMRGKPKESKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	1.0	0.8825
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	1.7	0.8203
AT5G16520			unknown protein		Lus10000439 [exp]	3.3	0.7855
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	3.9	0.8004
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	6.6	0.8204
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	12.2	0.8171
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	14.0	0.7661
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	16.6	0.7975
AT1G50120			unknown protein		Lus10013430 [exp]	16.6	0.7545
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	16.7	0.7614

Compare expression of checked genes

Lus10013286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.