Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27190 389 / 3e-133 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 345 / 3e-116 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 319 / 8e-106 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 251 / 2e-79 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G13380 200 / 2e-58 BRL3 BRI1-like 3 (.1) AT1G55610 200 / 2e-58 BRL1 BRI1 like (.1.2) AT5G07280 194 / 3e-56 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 179 / 6e-51 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G39400 177 / 2e-50 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G33430 174 / 2e-50 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 551 / 0 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 246 / 2e-77 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 245 / 8e-77 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10038875 [exp] 203 / 3e-59 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 202 / 4e-59 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 197 / 2e-57 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 196 / 5e-57 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 181 / 1e-51 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10025358 [exp] 169 / 3e-51 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081700 [exp] 428 / 2e-148 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 424 / 7e-147 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 375 / 1e-127 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 370 / 1e-125 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 261 / 2e-83 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 255 / 6e-81 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 255 / 7e-81 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 246 / 2e-77 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.015G141200 [exp] 196 / 7e-57 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 195 / 1e-56 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013288 pacid=23166618 polypeptide=Lus10013288 locus=Lus10013288.g ID=Lus10013288.BGIv1.0 annot-version=v1.0 ATGAACAGGCTAGGACAGTTACGCCATCCAAATTTGGTTCCATTGTTGGGATTCTGCGCTGTGGAGGAAGAAAGGTTACTCGTTTACAAGCATATGACAG GCGGGACTCTGTATTCTCAGCTGCACGGGTCCGGATTCGGAATCGGAACACAATCCTGCTCGATCGATTGGCCGACAAGGTTACGAATAGGCCTCGGAGC AGCTAGAGGCCTCGCTTGGCTTCACCACGGCTGCCAGCCACCATACATCCATCAATACATAAGCTCGAACGTCATCCTTCTCGACGACGATTTCGACGCC AGGGTAGCCGATTTCGGGCTGGCGAGGCTGGTCGCCACTCGCGACTCGAACGACAGCTCCTTCAACGGAGATTTGGGCGAGTTCGGGTACATCCCTCCCG AGTATTCAAGCACCATGGTAGCATCTTTAAAAGGCGACGTCTACGGGTTCGGAGTTGTGCTTCTCGAATTGGTCACTGGGCAGAAGCCATTGGATGTTGT GAACATTAATGCCGATGAAGCGTTCAAAGGGAACTTAGTCGATTGGGTGAACAGCCTTGTGATAGCTGGCCGGAGCAAAGACTGCATCGATAAATCGTTG GTCGGAAAGGGCCACGACGAGGAGATCACTCAGTGCTTGAAGGTGGCGCTGAACTGCGTGGGTTCGAGGCCCAAGGATAGGCAGCCGATGTACCGAGTTT ACGAGTCGTTGAAGGCGTTGGCCGAGAAACATGGGCCGAATGAGCAGTATGATGAGTTCCCTCTGGTGTTTGGTAAGCAGGAAGGTGGCGAATTGAAGGA GTAA
AA sequence Show only first row Show all	>Lus10013288 pacid=23166618 polypeptide=Lus10013288 locus=Lus10013288.g ID=Lus10013288.BGIv1.0 annot-version=v1.0 MNRLGQLRHPNLVPLLGFCAVEEERLLVYKHMTGGTLYSQLHGSGFGIGTQSCSIDWPTRLRIGLGAARGLAWLHHGCQPPYIHQYISSNVILLDDDFDA RVADFGLARLVATRDSNDSSFNGDLGEFGYIPPEYSSTMVASLKGDVYGFGVVLLELVTGQKPLDVVNINADEAFKGNLVDWVNSLVIAGRSKDCIDKSL VGKGHDEEITQCLKVALNCVGSRPKDRQPMYRVYESLKALAEKHGPNEQYDEFPLVFGKQEGGELKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	0	1
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	1.0	0.9322
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	5.1	0.8760
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	8.9	0.8525
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	9.5	0.8710
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	9.6	0.8195
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	11.7	0.8074
AT4G13990			Exostosin family protein (.1)		Lus10006694 [exp]	11.7	0.8277
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	12.0	0.8480
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	12.5	0.8242
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	13.0	0.8684

Compare expression of checked genes

Lus10013288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.