Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27200 565 / 0 Domain of unknown function (DUF23) (.1) AT5G40720 419 / 2e-140 Domain of unknown function (DUF23) (.1) AT3G27330 420 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37420 266 / 4e-81 Domain of unknown function (DUF23) (.1) AT2G33570 43 / 0.0005 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030815 [exp] 1149 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 739 / 0 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 658 / 0 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 427 / 3e-143 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032118 [exp] 415 / 8e-139 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013221 [exp] 283 / 7e-88 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 275 / 3e-85 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 245 / 3e-73 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 134 / 2e-33 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192000 [exp] 647 / 0 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 642 / 0 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 437 / 2e-147 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G252100 [exp] 287 / 6e-89 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10013291 pacid=23166583 polypeptide=Lus10013291 locus=Lus10013291.g ID=Lus10013291.BGIv1.0 annot-version=v1.0 ATGGATTCCGACCAGCGACGGAAGCGGCCAAAGAGTCGAATCAACCGAGCAACAGCCCTGAAAATAATCCTCTCATTCAGATCCCTCACTGTCTGCATAT CCACTTTCCTCTTCGTCCTCTTCTACTTCTCCAGCTCAGATCGGTCCCCTTTCCAACCCGTCCTCCGGGTCTCGGGTCTAACCCGGGTCCTCCCAAACCG CCTCCTCCAGCAAGACCATTACGTAGCCAGTAAGCCATCAATCGAAAGCCGGGTTCTATTACCGGACCATTTACTGCTCATTTTATCTAACCGGGTCAAA AAAGGAGAGAGCTTCGACTGCGTTTACTATCCTTTTCCCAATGCAGACCAATTGCTTGACGAAATGCTCGTGAGACCATCGATTTCCAGCGATGAGTACC AAGAGATCAAATCAATCGTTAGATGTGAGCTACCACCTGCGAAATACTCTTCCGCAGTGGATTTGCAGCGGTCCGGTGAGGTCGTCGATGGAGTTGGGAA CTGGAAAGTAGGGAATCAGACGGCGGAGGACTTTGGGAAGTTGGTGTATGAAGCCATTCTCGATTGGAATACGGTCGTCGTATTGGTCAAGGGGCTGAAT CTGAAACCTAGAAGGGAAGTTGATCCGTCTGGATTCAAATGCCATTTTGCTCTGAGTGATTTCAATAACGGATTCCTCTTCACTACTGAAGCAACTGCAG CAGCTCAAGAAGTCGTCCGCTGCTTGCTGCCCAAATCCATTAGAAACAACAATACACATTTAGCTGAAGGAATCCGTGTCACCATATCTGAAAACTCTGC CACTGAAAGAACCATTCTTCCTTCGGTGGCGAGAGTTTACAATCCGAGATCACACCTTCTTAGAGGGGAAGAAGGATCAAATTCAAGATACGAGCTTTGT GCTTGCACAATGCTGTGGAACCAAGCAGCATTCATCAAAGAATGGGTAATGTACCATGGCTATTTGGGAGTAGAGAGATGGTTCATCTATGACAACAACA GCGACGACGGGATTGAATCTGAAATCGAAGACCTCAACACACTCAACCACAACATAACCAGACACGTCTGGCCATGGACAAAGTCCCAAGAAGCCGGATT TTCGCACTGTGCTCTACGAGCTAAGTACGAATGCAAGTGGGTAGGGTTCTTTGACGTGGACGAGTTCTTCTACCTCTATCACAACCGGGGTAGTCCAAAC TTGCTTCGATCACTGGTATCGAATTACTCGAATAACTCACCATTAATTGCAGAGGTGCGAACAGGGTGTCACAGCTTTGGTCCCTCCGGACTCATTGCTC CACCTCCACAAGGGGTGACGGTGGGTTACACATGTAGGCTTGCGCCTCCGGAGAGGCACAAGTCGATCGTGAGGCCGGAGCTTTTAGACGTGACGCTGAT GAATATTGTGCACCATTTCAAGCTGAGGGAAGGGTACAAGACGGCGAATTTAGGCGATAGCGTTGGGGTGATCAACCATTACAAGTACCAGGTGTGGGAC ACTTTCAAGGCGAAGTTTTTCAGGAGGGTTTCTGCGTATGTGGCCAACTGGCAAGATGATCATAACAAAGGGTCGAAGGATAGAGCGCCTGGGTTAGGGA CGGAGGCTGTTGAGCCGGAGGATTGGCGGCTGAGGTTCTGTGAGGTTTGGGATACTGGGTTGAAGGATTTTGTTCTGGGGACTTTTGCTGATGTTGCTAC TGGGTTGCTTCCCTGGGAGATGAAGGAGAAGTCTTCTGCTGTGTGA
AA sequence Show only first row Show all	>Lus10013291 pacid=23166583 polypeptide=Lus10013291 locus=Lus10013291.g ID=Lus10013291.BGIv1.0 annot-version=v1.0 MDSDQRRKRPKSRINRATALKIILSFRSLTVCISTFLFVLFYFSSSDRSPFQPVLRVSGLTRVLPNRLLQQDHYVASKPSIESRVLLPDHLLLILSNRVK KGESFDCVYYPFPNADQLLDEMLVRPSISSDEYQEIKSIVRCELPPAKYSSAVDLQRSGEVVDGVGNWKVGNQTAEDFGKLVYEAILDWNTVVVLVKGLN LKPRREVDPSGFKCHFALSDFNNGFLFTTEATAAAQEVVRCLLPKSIRNNNTHLAEGIRVTISENSATERTILPSVARVYNPRSHLLRGEEGSNSRYELC ACTMLWNQAAFIKEWVMYHGYLGVERWFIYDNNSDDGIESEIEDLNTLNHNITRHVWPWTKSQEAGFSHCALRAKYECKWVGFFDVDEFFYLYHNRGSPN LLRSLVSNYSNNSPLIAEVRTGCHSFGPSGLIAPPPQGVTVGYTCRLAPPERHKSIVRPELLDVTLMNIVHHFKLREGYKTANLGDSVGVINHYKYQVWD TFKAKFFRRVSAYVANWQDDHNKGSKDRAPGLGTEAVEPEDWRLRFCEVWDTGLKDFVLGTFADVATGLLPWEMKEKSSAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	1.4	0.9323
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	1.7	0.9250
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	1.7	0.9340
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	3.0	0.9039
AT2G25625			unknown protein		Lus10013129 [exp]	4.5	0.9142
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	5.8	0.8911
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	6.3	0.9072
AT5G43150			unknown protein		Lus10004910 [exp]	6.6	0.9017
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	9.8	0.9053
					Lus10016958 [exp]	10.0	0.9033

Compare expression of checked genes

Lus10013291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.