Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 1348 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1288 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 1106 / 0 SNL1 SIN3-like 1 (.1.2) AT5G15020 753 / 0 SNL2 SIN3-like 2 (.1.2) AT1G59890 425 / 7e-128 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 403 / 4e-120 SNL6 SIN3-like 6 (.1) AT1G24200 210 / 6e-62 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 171 / 4e-49 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24230 135 / 2e-35 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 125 / 9e-33 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030817 [exp] 2409 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 1528 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 1199 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 764 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 737 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10029218 [exp] 330 / 7e-102 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10014505 [exp] 332 / 8e-101 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10030816 [exp] 150 / 2e-41 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 139 / 2e-37 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 1895 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 1882 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 1197 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.001G316300 [exp] 77 / 9e-16 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 56 / 2e-09 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10013293 pacid=23166633 polypeptide=Lus10013293 locus=Lus10013293.g ID=Lus10013293.BGIv1.0 annot-version=v1.0 ATGGTGGGAGGAGGTGCTGCCACTGGAGGGGGAGGAGGAGCTGGATCAGGAATTAGTGCCCAAAAGCTGACTACAAATGATGCATTGGCTTATCTCAAGG CTGTCAAGGACATATTCCAGGACAAACGAGAAAAATATGATGAATTTCTTGAGGTTATGAAAGATTTCAAAGCTCAAAGAATCGACACTGCCGGTGTCAT AGGGAGGGTAAAGGACTTGTTTAAAGGGCATCGTGACCTGATTTTGGGTTTTAATACCTTCTTGCCAAAGGGGTATGAGATCACTCTACCGCTGGAGGAT GAACAGCCCCCGCAGAAGAAACCAGTTGAATTTGAAGAAGCCATTAATTTTGTGACCAAAATTAAGACAAGGTTTCAGGGTGATGATCATGTTTACAAAG CATTTTTAGATATTTTGAACATGTACAGACAGGAGAATAAATCCATCACAGAGGTTTATCAGGAGGTGGCTGCTCTGTTCAAAGACCACCATGATTTGCT TGGAGAGTTTACCCACTTTTTACCTGATAATTCAGCTACAGCTTCTACCCAGTTTGCTTCTTCAAATAGGAATCCTATTCTCCGTGATAGGAGCTCCCCG ATGCCTTCAAATCGTCAAATGCATGTTGACAAGAAAGAACGGATTCATCCAGATCGTGATTTCAGTGTTGATCGTCCTGATCCAGACCATGATAGAGCTT TGATGAGAGCTGATAAAGAGCAAAGGAGACGAGTCGAAAAAGAAAAGGAGAGAAGAGAAGATAGAGATAGGAGAGAACGTGATGATAGAGACTATGAGCA GGATGCTAGTCATGACTATCGGTTTCCACTTAAGGGGAAACTTGGTCGTCAGTTGGAAGATTCCGGTGCTGAGTGTCAAGTTGTTGGGGGGGATGATAAC TATGGAATGCATCCTGTTTCATCCAGCTATGATGATAAAAGTGCAGTTAAAAGTGCATTAAGTCTTGAGCTCGGTTACTGTGATAAAGTGAAGGAGAAGT TGGAGAAGACTGGAGATTACCAGGAATTTTTGAAGTGTCTCCATCTCTACACAAAAGACATAATCAATCGAAAAGACTTGCAAAATTTGGTGGCTGAATT ACTTGCGGAATATCCTGATCTTATAGATGGCTTCAATGACTTTTTGGCACGTTGTGAAAAGAATGAGGGCTTACTTGCTTGTCTTGTGAGTAAAAGTAAT TTTCCCAGACCAGTGAAGGCAGAGAACAGGGATAGAGAGCGCGAGAGGAATGATGTCGCTAAAGAAAGGGATCATGACATGCGAGAGAGAGATAGACTTG ACAAAAATGTGGCCTTTACTAATAAAGACACTGGAAATCAAAAGATGTCCTTGTATTCTAGCAAGGACAAGCTTTTGTGGAAACCAGTCAATGAACTTGA CCTGTCCAATTGTGACAGCTGCACTCCAAGTTATCGGCTTCTTCCAAAGAATTATCCCATTCCCACAGCGAGCTACAGGACAGAGATTGTTGCTGAAGTT CTGAATGACCATTGGGTATCCGTCACTTCAGGAAGTGAAGATTACTCTTTTAAGCACATGCGCAAGAACCAGTATGAAGAAAGCCTATTCCGATGCGAGG ATGACAGGTTTGAGTTGGATATGCTGTTGGAATCTGTAAATGTAACAACTAAGCGTGTAGAGGAGTTGATGGAGAATATCAACAACACTAAGAAAGGAGA CAATCCCGTTCGTTATGAGGACTACCTAACAGCTCTAAACCTGAGGTGCATTGAACGGTTATATGGGGATCACGGGCTTGATGTGATGGACGTGTTAAGG AGGAACACATCTCTTGCTTTGCCCGTGATATTGACTCGCTTGAAGCAGAAGCAAGAAGAGTGGGCTAGGTGCCGCTCAGATTTTAATAAAGTCTGGGCTG AAATCTATTCCAAGAACTACCACAAATCACTTGACCATCGTAGCTTCTACTTCAAGCAGCAAGATACAAAGAGCCTGAGCACCAAAGCTCTTTTGGCAGA GATTAAGGAAATTAGTGAGAAGAAGCGTAAAGAAGATGACATGCTTCTAGCATTTGCTGCTGGAAACAGGCATCCAATTATACCGAATTTGGAGTTTGAG TATCCAGATCCTGATGTCCATGAGGATTTGTATCAGCTCATCAAGTATTCTTGTGGGGAAGTTTGTACAACGGAACAGTTAGACAAGGCCATGAAAATTT GGACAACTTTCTTAGAACCAATGCTCGGCGTTCCTTCTCGGCCTAACGGTACAGAGGACACAGAAGATGTTGTGAACGCAAAGACCTGTTCTTCCAAGCA TGGAGATAGCGAGGGAAGTCCAAGCAACTCGAAGCATGGAAATCCTTCAAGAAATGGAGAAGAAAGCATCCAACCTGAGCAGTCAAGTTCAACCAGGGTA TGGTTGGATAATGGGGTCAAAGAAAATGGCTCTCCGAGCACCAATCATACTGCTCGTAAACTTGATACTTGCTCCAGTGCCCTTAAAAACGATAAGCCAG ACAATGAAGCCAAACAAGCTACTTCCAATGAACGGTTGGCGAACTCGAGTGCGACACAACTTGCTACTGGGGCGGAGATAAGTAATGGAAGAAACATCCC TGAGTCAGGTGCTGCGGGAGCTTCATCGATGCCTAATAGTGGCACCACTGATGGTGGGTTCGCAATAGGATCCAGTAAAGTATTGCCTTCAACAGAGGCT GGTGAATTTTCAAGGCCTGTGATATCGACAAATGGGGTGGTTGCAGAGGGTATTAATAAAAGTCACAATTACGAGGAACCGAATGCACAGTTTAAGCTTG AAAGAGAAGAGGGGGAGTTGTCTCCGAATGGAGATTTCGAGGAGGATAATTTTGCAGTTTATGGAGAAGCTGGTTCAGAACCGGCTGCTGCAAATAAACA GAAAGACGGTGCCCCAAGCAGACACTATCAAGGAGGAAGAAATGGGGAAGGCGAAACCCGTCGAGAGGCAGCAGGAGAAAACGATGCGGACGACGAAAAC GATGCTGAGGAGAGTGCACAAAGAACGTCGGAAGACAACAGTGAGAACGTCTCTGAGAATGCTGATGTCTCTGGGAGCGAGTCCGGTGATGGTGAAGAGG AGTGCTCTAGGGAAGAGCATGAAGAAGATGGCGATCATGCTGATAATGATGATAAGGCCGAGAGCGAAGGCGAGGCTGAAGGGATGGCCGATGCTCACGA TGTTGATGGAGATGGAATGGTTTTACCGTTTTCCGAAAGATTCCTTCTTAACGTGAAACCTCTAGCAAAGCATGTCCCGCCATCACTGCATGAACGAGGA AAGGCTTCGCGCATTTTCTACGGAAATGATTCGTTCTATGTGCTCTTCAGGCTTCACCAAACTCTGTACGAGAGAATAAAATCTGCGAAGATCAACTCAT CATCTGCTGACAGGAAATGGAGAACTTCAAACGAAACAAGTTCTACTGATCTGTATGCTAGATTTATGAGTGCACTGTACAACCTACTTGATGGATCTTC AGATAACACAAAATTCGAGGATGACTGCCGAGCTATAATCGGGACACAGTCTTATGTCTTATTTACTTTGGATAAGCTTATATATAAGCTAGTCAAACAG CTCCAAACAGTGGCAACCGACGAGATGGACAGCAAGCTACTTCAGTTATATGCTTACGAAAAATCAAGAAAAGCTGGAAGATTCGTCGACATTGTGTATC ATGAGAACACTCGCGTTCTCCTCCACGACGAGAATATATACAGAATCGAATGTTCCTCGAGCCCAACAAGCTTGTCGGTACAGCTTATGGATTTTGTACA TGACAAGCCTGAGGTGACTGCTGTTTCCATGGACCCCAACTTCGCGACGTACCTACACAACGACTTCCTCTCCATCATTCCGGAGAAGAAAGAGAAGCCT GGTGTTTTCCTGAAGAGGAACAAACGCAGGAATGTTGTGGGCGATGAATTCCAAAGCACGGAAGGATTCCAGATTTTCAACGGGTTAGAATGCAAAATCG CCTGCAGTTCTTCCAAGGTATCTTATGTATTAGACACGGAAGATTATTTGTTTCGTACGAGGAGAAAAGGAAGGCGAACCCTCCAGCAGAACCAGGGGAA GTGTCGAAAAAGAATAGATCAATTCCAACGATGGCTCTCTAGGTCATCATAG
AA sequence Show only first row Show all	>Lus10013293 pacid=23166633 polypeptide=Lus10013293 locus=Lus10013293.g ID=Lus10013293.BGIv1.0 annot-version=v1.0 MVGGGAATGGGGGAGSGISAQKLTTNDALAYLKAVKDIFQDKREKYDEFLEVMKDFKAQRIDTAGVIGRVKDLFKGHRDLILGFNTFLPKGYEITLPLED EQPPQKKPVEFEEAINFVTKIKTRFQGDDHVYKAFLDILNMYRQENKSITEVYQEVAALFKDHHDLLGEFTHFLPDNSATASTQFASSNRNPILRDRSSP MPSNRQMHVDKKERIHPDRDFSVDRPDPDHDRALMRADKEQRRRVEKEKERREDRDRRERDDRDYEQDASHDYRFPLKGKLGRQLEDSGAECQVVGGDDN YGMHPVSSSYDDKSAVKSALSLELGYCDKVKEKLEKTGDYQEFLKCLHLYTKDIINRKDLQNLVAELLAEYPDLIDGFNDFLARCEKNEGLLACLVSKSN FPRPVKAENRDRERERNDVAKERDHDMRERDRLDKNVAFTNKDTGNQKMSLYSSKDKLLWKPVNELDLSNCDSCTPSYRLLPKNYPIPTASYRTEIVAEV LNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELMENINNTKKGDNPVRYEDYLTALNLRCIERLYGDHGLDVMDVLR RNTSLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDMLLAFAAGNRHPIIPNLEFE YPDPDVHEDLYQLIKYSCGEVCTTEQLDKAMKIWTTFLEPMLGVPSRPNGTEDTEDVVNAKTCSSKHGDSEGSPSNSKHGNPSRNGEESIQPEQSSSTRV WLDNGVKENGSPSTNHTARKLDTCSSALKNDKPDNEAKQATSNERLANSSATQLATGAEISNGRNIPESGAAGASSMPNSGTTDGGFAIGSSKVLPSTEA GEFSRPVISTNGVVAEGINKSHNYEEPNAQFKLEREEGELSPNGDFEEDNFAVYGEAGSEPAAANKQKDGAPSRHYQGGRNGEGETRREAAGENDADDEN DAEESAQRTSEDNSENVSENADVSGSESGDGEEECSREEHEEDGDHADNDDKAESEGEAEGMADAHDVDGDGMVLPFSERFLLNVKPLAKHVPPSLHERG KASRIFYGNDSFYVLFRLHQTLYERIKSAKINSSSADRKWRTSNETSSTDLYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQ LQTVATDEMDSKLLQLYAYEKSRKAGRFVDIVYHENTRVLLHDENIYRIECSSSPTSLSVQLMDFVHDKPEVTAVSMDPNFATYLHNDFLSIIPEKKEKP GVFLKRNKRRNVVGDEFQSTEGFQIFNGLECKIACSSSKVSYVLDTEDYLFRTRRKGRRTLQQNQGKCRKRIDQFQRWLSRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	1.0	0.9267
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	2.4	0.8618
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	3.2	0.8286
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	4.9	0.8281
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	5.2	0.8561
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	5.7	0.8520
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	6.3	0.8513
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	6.4	0.7676
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	6.6	0.8017
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	7.0	0.7583

Compare expression of checked genes

Lus10013293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.