Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70070 1304 / 0 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT1G59760 258 / 2e-71 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 256 / 1e-69 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 242 / 4e-66 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT5G61140 99 / 1e-20 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 92 / 1e-18 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT4G32700 82 / 3e-15 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G20960 74 / 8e-13 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 69 / 2e-11 U5 small nuclear ribonucleoprotein helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030818 [exp] 1842 / 0 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10027599 [exp] 249 / 2e-68 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 251 / 4e-68 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 206 / 3e-54 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 186 / 2e-50 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 149 / 4e-36 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022115 [exp] 85 / 4e-16 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10014551 [exp] 84 / 5e-16 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10040524 [exp] 79 / 2e-14 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038500 [exp] 1423 / 0 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.004G228700 [exp] 256 / 1e-70 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 242 / 7e-69 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 241 / 7e-66 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 150 / 2e-36 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.015G056501 [exp] 101 / 2e-21 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.018G036600 [exp] 90 / 7e-18 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.015G095500 [exp] 74 / 8e-13 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 69 / 2e-11 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.001G348200 [exp] 66 / 2e-10 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10013294 pacid=23166647 polypeptide=Lus10013294 locus=Lus10013294.g ID=Lus10013294.BGIv1.0 annot-version=v1.0 ATGAAAACGCTCCCTATCCTTTCACCTCTGCAACTCTTGTCCCTTTCTCCTATCTCCTCCTTCACCATCTCCCCTTCATTTCCCTACCTGAATCCTCCTC GCAGAACCCTAGCACTCCTCCCCCGTCCTCGCCTCATCCTTTCCTTCAACTCCTCACGTTCACGCCACCACTTCAAGTCCCCCGACTCCGTCGAATCACT CCTCCCCGACGAAGATGAAGAAGACGAAGACGAGGATGAAGAAGATGATGACGACGACGATGATGAAGAAGCAGCTGACGAGTACGAGTTCGATGACGAG GACGATGAAGACGGAATTGAAGCGGACGGGAGAGGTCTCAGCACGAGCGAGGAGGACGAGGCTGAAGTGACGACGACCTCGGCTTGGCGCCAGGAGTCGA GGTTTCAGAGAGTGGAGAGGATCCGTGCTGTGGTGAAGGAGCTTGGAGGAGACATTATTGACGTGGATGAGCTTGCTTCCGTTTATGATTTCCGCATCGA CAAGTTTCAGCGATTGCGAGTTGTGCGTCAGCGGTTGGTTGTGGAAGCGTTCGTGAGAGGCTCCTCGGTGGTGGTGTCGGCTCCGACGAGCAGCGGGAAG ACGTTGATAGCTGAGGCAGCTGCGGTGGCTACTGTAGCTAGAGGGAGGAGGATATTCTATACTACTCCGCTCAAGGCTTTGTCCAATCAGAAATTCCGTG ATTTTCGGGAGACGTTTGGAGAAGCTAACGTCGGTCTCCTCACCGGGGATGCTGCTGTGAACAAAGACGCTCAGATTTTAATCATGACTACTGAGATTCT GCGTAATATGCTGTATCAAAGCATTGGGACAGTTTCCTCTGGAAGTGGGCTTTCGTTTGTCGACGTGATTGTTCTGGATGAAGTTCATTATCTAAGTGAT ATATCTCGGGGAACAGTGTGGGAGGAGATTGTTATTTACTGTCCAAAGGAGGTTCAATTGATATGTCTATCAGCAACCGTGAAGAATCCGGATGAGCTAG CTGGTTGGATACGCGAGGTGCATGGCGAGACTGAATTGGTTACTACCTCACGGCGTCCAGTTCCATTAACTTGGCATTTCTCCACTAAGACTAATTTGCT TCCTCTTCTAGAAGAGAAAGGAACGCGCATGAACAGGAAGCTGTCCCTCAATTACTTGCAGCTTTCTGCCCCAGGGTCTAAATCATATGGGGATGAGGAG TGGCCACGGAGTAAAAATTCTAGGAAACGTTCGAGTCGAAGTGGTCAGAACAGCAAGCTAATAGTTCCTGAAGAATCTCTTTCAAGAAATGATATTAGCA GAATTCGACGTTCATTGGTGCCTCGAGTTATTGACACATTAGCTCAGCTAAATGCAAGAGATATGCTGCCAGCAATCTGGTTCATATTCAGCAGAAGAGG ATGCGACGCTGCTGTTAAGTACGTAGAAGATTACACCCTCTTGGATGAGTGTGAAGCTAGTGAGGTTGAGCTGGCTCTAAAGAAGTTCAGTATTCAGAGC CCCGATGCCGTCAGAGAGACAGCTGTCCGAGGACTACGAAGAGGGGTTGCTGCTCATCATGCCGGATGTCTACCTCTGTGGAAATCGCTCATCGAGGAAT TATTTCAGAGAGGACTGATCAAGGTTGTCTTTGCTACTGAGACACTAGCTGCTGGGATAAACATGCCCGCTAGAACAGCTGTAATCACATCTATCCGCAA AAGGAATGCTAACGGTCGTATCGACTTGAGACCGAATGATCTGCTCCAAATGGCTGGACGAGCTGGACGTCGAGGCATTGACGAAAGGGGCCACGTTGTC TTGATTCAGAGCCCCACCGAAGGCGCTGAAGAAGCTTGTAAGCTTCTATCCGCTGGACTTGAACCTCTTGTGTCCCAGTTCACTGCTTCTTACGGGATGG TTCTGAACTTGCTCTCCGGTTCCAAACTCACCAGTGGTGTGCCAAACGAGTCTGTTGACTTGGAACCACTTCGGGCAGGGAGAACTCTGGAAATCGATAG AAAGAGCAGGAAAACTTTATCACAGTGGGCTTACAAAGAGATTGCAGTACTTCAGCAACATCTTACAGAGGCGAAACGCCAAAGAGGAGAACTAAGAAGA CTAAAGGAAGTCCAGAAATCGATTGCCTTGAAAAGTCTCCTCGCCGAAAGGGGAAGTAGTGACCACTTACCTTTCCTGTGCTTACAGTATAATGATTCCC AAGGAGTTGAACATTCAGTCCCTGCTGTTTACTTGGGGACGGCTGATTCCTTCAGTAGCTCGAAACTTATCGACATCATTTCTTCCGATGATGAAGAACA AGAAGAAGAACCGTCTTATCACTTGGCGCTAGGCTCAGACAATTCATGGTATCTTTTCACAGAGAAGTGGATAAGAACAGTTTACAGCACGGGGTTTCCA AACGTGCCCTTATCCCAAGGCGATGCTTCGCCTCGAGATGCTATGTGGACGCTCCTGGATAAAGAGGACAAGTCATGGGGGAAAGTAGCTCATCATTCCG AGCTCGGTGGGTTATGGTACTCGGAAGGGTCTTTAGATACATGGTCGTGGAGTCTAAACGTCCCAGTTCTGAGCAGTCTCTCCGAAAACGACGAGATACT GCACACCTCGCAAGCCTACTTCAACGCAACCGAGCTATATAAAGAACAACGAAACAAGGTGTCGAGGTTGAAGAAGAGTATATCGAGAACGGAAGGGTTT AAAGAATACAGGAAGATCCTGGAATGGAAGTACGAGACTGAGGACACGATCAAGCGGCTCAAGGTCCGGTCAACCCGGCTAGCCGAAAGGATAAAGGAGA TCGAACCGTCCGGGTGGAAGGAGTTCCTGAGGCTGTGTAACGTGGTGCATGAAGTTAGGGCTTTAGATATAAACACGCACGTGATATTCCCGCTCGGCGA GACAGCAGCCGCAATTCGAGGGGAAAACGAGCTGTGGCTCGCGATGGTGATTCGGAGCCGTCTTTTAATCGACTTGAAGCCATCGGAGCTGGCGGGGGTG TGTGCCGGAGTGGTATCGGAAGGGGTAAAAGTGCGGGTTCACGAGAATGGGGACCAGATTTACGAGCCTTCGGGTGTGGTGGTGGATGTGATCGGGAAGC TGGAGAAGCAGAGGAGTAGGTTTGTGAAGGTGCAGCAGAGGCATGGGGTGGAGATGTCTTGTTTCTTGGATAGCAAGTTTGCTGGCATGGTGGAAGCTTG GGCTTCAGGGTTGAGCTGGAAAGAGATTATAATGGATTGCGCAATGGACGATGGGGATTTGGCTCGTCTGTTGAGAAGGACGATCGACTTGTTGGCTCAG ATTCCGAAGTTGCCTGATGTTGACCCGGTCCTGAAGACTAATGCCAGGTCTGCTTCCGATGTAATGGATCGTTCTCCGATTAGCGAACTTGCCGGATGA
AA sequence Show only first row Show all	>Lus10013294 pacid=23166647 polypeptide=Lus10013294 locus=Lus10013294.g ID=Lus10013294.BGIv1.0 annot-version=v1.0 MKTLPILSPLQLLSLSPISSFTISPSFPYLNPPRRTLALLPRPRLILSFNSSRSRHHFKSPDSVESLLPDEDEEDEDEDEEDDDDDDDEEAADEYEFDDE DDEDGIEADGRGLSTSEEDEAEVTTTSAWRQESRFQRVERIRAVVKELGGDIIDVDELASVYDFRIDKFQRLRVVRQRLVVEAFVRGSSVVVSAPTSSGK TLIAEAAAVATVARGRRIFYTTPLKALSNQKFRDFRETFGEANVGLLTGDAAVNKDAQILIMTTEILRNMLYQSIGTVSSGSGLSFVDVIVLDEVHYLSD ISRGTVWEEIVIYCPKEVQLICLSATVKNPDELAGWIREVHGETELVTTSRRPVPLTWHFSTKTNLLPLLEEKGTRMNRKLSLNYLQLSAPGSKSYGDEE WPRSKNSRKRSSRSGQNSKLIVPEESLSRNDISRIRRSLVPRVIDTLAQLNARDMLPAIWFIFSRRGCDAAVKYVEDYTLLDECEASEVELALKKFSIQS PDAVRETAVRGLRRGVAAHHAGCLPLWKSLIEELFQRGLIKVVFATETLAAGINMPARTAVITSIRKRNANGRIDLRPNDLLQMAGRAGRRGIDERGHVV LIQSPTEGAEEACKLLSAGLEPLVSQFTASYGMVLNLLSGSKLTSGVPNESVDLEPLRAGRTLEIDRKSRKTLSQWAYKEIAVLQQHLTEAKRQRGELRR LKEVQKSIALKSLLAERGSSDHLPFLCLQYNDSQGVEHSVPAVYLGTADSFSSSKLIDIISSDDEEQEEEPSYHLALGSDNSWYLFTEKWIRTVYSTGFP NVPLSQGDASPRDAMWTLLDKEDKSWGKVAHHSELGGLWYSEGSLDTWSWSLNVPVLSSLSENDEILHTSQAYFNATELYKEQRNKVSRLKKSISRTEGF KEYRKILEWKYETEDTIKRLKVRSTRLAERIKEIEPSGWKEFLRLCNVVHEVRALDINTHVIFPLGETAAAIRGENELWLAMVIRSRLLIDLKPSELAGV CAGVVSEGVKVRVHENGDQIYEPSGVVVDVIGKLEKQRSRFVKVQQRHGVEMSCFLDSKFAGMVEAWASGLSWKEIIMDCAMDDGDLARLLRRTIDLLAQ IPKLPDVDPVLKTNARSASDVMDRSPISELAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10013294 [exp]	0	1
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10030818 [exp]	1.0	0.9730
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	1.4	0.9488
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	8.8	0.8889
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	9.6	0.9289
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	9.8	0.9112
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	10.8	0.9257
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	13.2	0.9202
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	13.6	0.9152
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	13.9	0.8846
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	14.5	0.9173

Compare expression of checked genes

Lus10013294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.