Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59900 673 / 0 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 657 / 0 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 245 / 3e-77 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT5G09300 148 / 1e-40 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 144 / 1e-38 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 96 / 8e-22 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010728 [exp] 694 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 680 / 0 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 590 / 0 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 246 / 1e-77 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Lus10030819 [exp] 160 / 8e-49 AT1G59900 124 / 1e-35 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10018945 [exp] 154 / 9e-41 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10028648 [exp] 152 / 1e-40 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 134 / 5e-35 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 122 / 4e-31 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038400 [exp] 672 / 0 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 664 / 0 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 247 / 8e-78 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.005G064000 [exp] 151 / 4e-41 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 137 / 5e-36 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 132 / 4e-34 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10013295 pacid=23166677 polypeptide=Lus10013295 locus=Lus10013295.g ID=Lus10013295.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCCCGCCTATCCTCCACCAGATCCAATCTCCTCCGCCCCTTCACAACCGCCGCAGCTATGTCCTCCTCCTTCCTCCGTCAAATCTCAACTT CAACAGAGCCCCTAACAATCGAAACATCGATACCTTTCACCTCCCACAACTGCTCCCCTCCCTCCCGCTCCGTCGACACAACTCCGAACGAGCTCATGTC ATTCTTCCGCGACATGGCGCTCATGCGCCGGATGGAGATCGCCGCCGACTCGCTCTATAAGGCCAAGCTCATCCGCGGATTCTGCCATCTCTACGACGGG CAGGAGGCCGTCTGTGTCGGGATGGAAGCCGCCATCACCAAGAAGGACTGCATCATCACGGCGTACCGCGACCACTGCACGTTCTTAGGCCGAGGGGGAA CGCTCCTCGAGGTGTTCTCCGAGCTCATGGGGAGGAAAGACGGGTGCTCCAAGGGGAAAGGCGGGTCAATGAATGTTTATAAGACGGAGGCTGGATTCTA CGGCGGTCATGGGATCGTCGGAGCTCAGGTGCCGTTGGGATGTGGATTGGCGTTTGCTCAGAAGTATAAGAAGGAGGAGACTGCGACTTTTGCGCTTTAT GGAGATGGTGCTGCGAATCAAGGGCAGTTGTTTGAGGCTCTTAACATCTCGGCTCTGTGGGATCTGCCCATTATCTTGGTTTGTGAGAATAACCATTATG GTATGGGTACTGCTGAATGGCGGGCAGCTAAGAGCCCTTCGTATTACAAACGTGGTGATTATGTTCCTGGATTGAAGGTTGATGGTATGGATGTACTTGC TGTTAAACAAGCGTGCAAATTTGCAAAGGAGCATGTGTTGAAGAATGGACCAATTATTCTCGAAATGGACACGTACAGGTACCACGGTCACTCCATGTCC GATCCAGGTAGCACCTACCGTACCCGTGATGAAATCTCTGGCGTCAGACAGGAACGTGATCCAATTGAAAGAGTAAGGAAGTTGATTCTAGCCCATGATC TAGCTACGGAGAAAGAGCTGAAGGACATCGAGAAGGAAGCAAGGAAAGAAGTAGACGAAGCCATAGCTAAAGCCAAGGAGAGCCCAATGCCAGAGCCATC TGATCTCTTCACAAACGTATACTCCAAAGGTCTCGGAACTGAGTCGTTCGGAGCTGATAGGAAAGAACTGAGAGCCACTCTTCCATAG
AA sequence Show only first row Show all	>Lus10013295 pacid=23166677 polypeptide=Lus10013295 locus=Lus10013295.g ID=Lus10013295.BGIv1.0 annot-version=v1.0 MALSRLSSTRSNLLRPFTTAAAMSSSFLRQISTSTEPLTIETSIPFTSHNCSPPSRSVDTTPNELMSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDG QEAVCVGMEAAITKKDCIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSKGKGGSMNVYKTEAGFYGGHGIVGAQVPLGCGLAFAQKYKKEETATFALY GDGAANQGQLFEALNISALWDLPIILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHVLKNGPIILEMDTYRYHGHSMS DPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATEKELKDIEKEARKEVDEAIAKAKESPMPEPSDLFTNVYSKGLGTESFGADRKELRATLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	1.0	0.9571
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	2.0	0.9376
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	2.4	0.9303
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	2.4	0.9259
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	5.5	0.9199
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Lus10020966 [exp]	6.5	0.9250
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	6.9	0.9285
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	7.7	0.9123
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	8.9	0.9041
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	9.5	0.9105

Compare expression of checked genes

Lus10013295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.