Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 511 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 489 / 2e-172 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 431 / 3e-150 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT4G02130 409 / 1e-141 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 407 / 5e-141 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 390 / 3e-134 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 363 / 1e-123 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 363 / 1e-123 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 362 / 3e-123 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 350 / 1e-118 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030821 [exp] 715 / 0 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 561 / 0 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 553 / 0 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 410 / 9e-141 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10041489 [exp] 386 / 2e-132 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 385 / 3e-132 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10016301 [exp] 375 / 3e-128 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 369 / 1e-125 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 368 / 2e-125 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038300 [exp] 522 / 0 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 514 / 0 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 407 / 2e-140 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 400 / 6e-138 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G129400 [exp] 381 / 1e-130 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 379 / 8e-130 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.014G040300 [exp] 375 / 2e-128 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 371 / 9e-127 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.002G132900 [exp] 369 / 4e-126 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 367 / 2e-125 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10013296 pacid=23166668 polypeptide=Lus10013296 locus=Lus10013296.g ID=Lus10013296.BGIv1.0 annot-version=v1.0 ATGGCTTCTTATTCTTCCAATTTGAGTATAATCAGGTTAGGTTCCTCATTTTTGTTCATCTTCATCCTCATCGCCGTTATCTCCTCTTTCTCCGTCTGCC TTGGGATCCGTTCCTTCCCCGAAACGGCGGCAGATCTGGCCGGGTCTCCATTCCGGTTCAACGAGGCCCCCGAGTACCGCAACGGCGCTGGCTGCCCGAA CCTGTCCCCGGACCCGTCATTAAACGGCGTCGTGTCTCCCTGCGACCCGTCGCTAATCCACGTGGCGATGACGCTGGACTCGGAGTATCTCCGTGGATCG ATCGCCGCCGTACATTCAGTACTGAAGCACGCCTCCTGCCCGGAAAACGTCTACCTCCACTTCGTCGCGGCCGAATTCGACCCGACGACTCCCCGGGTCC TGACCCGGCTCGTGAAGTCGGTTTTCCCGTCGCTCTGGTTCCACGTCCACATATTCCGGGAAGACGCCGTTATCAACCTAATCTCGTCGTCAATCAGGCA AGCTCTCGAGAACCCGTTAAACTACGCTCGAAACTATCTCGGAGAGCTTCTCTTCCCTTGTATAAACCGGGTCATCTACTTAGATTCGGATCTGGTTCTC GTCGACGACGTACAGAAGCTCTGGACTACCGTTCTAACCGGGTCGCGGGTCATCGGGGCGCCCGAATACTGCCACGCGAATTTCACAAAGTACTTCACTC CGACGTTCTGGTCCGACCCGATTACGTCCCGGGTGTTCTCGACCCGGAAGCCCTGCTACTTCAACACAGGGGTGATGGTGATGGATCTGGTTAAGTGGAG GGAAGGGAATTACAGGAAGAAGATCGAGATGTGGATGGAAGTTCAGAGGCAGAGGAGGATTTACGAGCTTGGTTCCTTGCCGCCGTTCCTGCTGGTGTTC GCCGGGAACGTGGAGGCGATTGATCACCGGTGGAATCAGCACGGTTTGGGAGGGGATAATGTGAGGGGAAGCTGTCGGTCTCTGCATCCCGGTCCGGTGA GCTTGCTCCATTGGAGTGGTAAGGGGAAGCCATGGGTGAGACTGGATGGGAAAGTTGCTTGTCCACTTGATTATCTGTGGGAGCCTTATGATCTGTATTC AGGAGCTAGCACCGCTACTCGGGCTTTGTCTGGGACACTAAACGACTATGTTGCGGCGTTTATAAATAGGAAGTATGGCACAAGCACCCCTGTGCTTGTG GCTCAAGCTTCCAATTCTCCGAGGGATGTGATGAAGATTTGGAAGAAGAATGAGTGGAAGTGGAGATGCAGAGTAGAAAGTGGAGGTGGTAGTGCTGCTA TGCCCTTTTTGGATTCCCAGTTGGACCAGCTAGAGATGTAG
AA sequence Show only first row Show all	>Lus10013296 pacid=23166668 polypeptide=Lus10013296 locus=Lus10013296.g ID=Lus10013296.BGIv1.0 annot-version=v1.0 MASYSSNLSIIRLGSSFLFIFILIAVISSFSVCLGIRSFPETAADLAGSPFRFNEAPEYRNGAGCPNLSPDPSLNGVVSPCDPSLIHVAMTLDSEYLRGS IAAVHSVLKHASCPENVYLHFVAAEFDPTTPRVLTRLVKSVFPSLWFHVHIFREDAVINLISSSIRQALENPLNYARNYLGELLFPCINRVIYLDSDLVL VDDVQKLWTTVLTGSRVIGAPEYCHANFTKYFTPTFWSDPITSRVFSTRKPCYFNTGVMVMDLVKWREGNYRKKIEMWMEVQRQRRIYELGSLPPFLLVF AGNVEAIDHRWNQHGLGGDNVRGSCRSLHPGPVSLLHWSGKGKPWVRLDGKVACPLDYLWEPYDLYSGASTATRALSGTLNDYVAAFINRKYGTSTPVLV AQASNSPRDVMKIWKKNEWKWRCRVESGGGSAAMPFLDSQLDQLEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	1.0	0.9266
AT3G06150			unknown protein		Lus10004424 [exp]	2.4	0.9177
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	6.0	0.9030
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	6.2	0.8724
AT5G02420			unknown protein		Lus10037925 [exp]	6.2	0.8714
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	6.3	0.9142
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	6.5	0.9077
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	6.9	0.9013
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	7.3	0.9162
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	8.1	0.9115

Compare expression of checked genes

Lus10013296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.