Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10230 489 / 4e-170 AtLCY, LYC lycopene cyclase (.1.2) AT5G57030 233 / 6e-70 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038986 [exp] 484 / 1e-167 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10027278 [exp] 483 / 2e-167 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10005190 [exp] 262 / 4e-86 AT3G10230 159 / 3e-48 lycopene cyclase (.1.2) Lus10021576 [exp] 232 / 1e-69 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 231 / 9e-66 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10005189 [exp] 203 / 1e-63 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2) Lus10000221 [exp] 100 / 3e-24 AT5G57030 251 / 9e-82 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159800 [exp] 601 / 0 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 585 / 0 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.016G040200 [exp] 484 / 7e-168 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.006G043092 [exp] 482 / 4e-167 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.006G147300 [exp] 227 / 2e-67 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.001G229166 [exp] 166 / 2e-49 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2) Potri.001G219250 [exp] 51 / 6e-08 AT3G10230 62 / 8e-13 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10013298 pacid=23151362 polypeptide=Lus10013298 locus=Lus10013298.g ID=Lus10013298.BGIv1.0 annot-version=v1.0 ATGGCAGCAACTCCTTTACCTCTCTTCTCCCAACTTCCAACCACCAAACCTCCCCAATTCCCCCACTTCTCCGCCGCCGCACAACCACCCAACTTCCGCC GCACAACAAGAGTCCACAGCAGCACTAGCAGCAAATTTGGATCTTTCCTCGACCTAAAACCCGACACCCAACCCGAACCGATCCACTTCCCGGACCTCCC TTTCCACCACCCAAATCCTACCAACTGGAAATCATCCCAATTTGACGTGATCGTGATTGGAGCCGGCCCGGCCGGCCTCCGATTAGCGGAGCAAATTTCC CTCCGGGGAATCAAAGTCTGCTCCGTCGACCCGTCCCCGCTCTCCTCCTGGCCGAACAACTACGGATCCTGGCTCGACGAATTCGAGCCGTTGGATCTCT CTGACCGCCTCCACAAAAACCGGCCAAGCGCCACCCTCGCCACAGAAACCTGGCCAATCGCCACCGTCCACATCGACGACAACAACACAAAGCACCTGAA TCGGCCTTACTCCCGGCTGAACCGAACCAAACTCAAAACCAAGCTCCTACACAACTGCTCCCTAAACGGCGTCGTATTCAAACCCGCCAAAGTCTGGGAA ATCCGCCACGCCGAGTTCCAATGCGATGTCGTCTGCTCCGACGGCGAAGTGCTAAAAGCCAGTTTAGTAATCGACGCGGGCGGATTCGGATCGCCGTTCG TCCAATACGACGACGTGCGCGGGAGGCTAAACGAAGGGTACCAGATCGCGCACGGGATCTTGGCCGAGGTGGAAGGAGGGCATCCGTTCGACCTGGATCA GATGGTGTTGATGGACTGGAGGGATTCTCACATGGGGAACGAACCGTATCTGAGGAAGGGGAATTGTGAGGTTCCGACGTTCTTGTACGCGATGCCGTTT GATTCCGATCTGGTGTTTTTGGAGGAGACGAGTCTGGTGAGCCGGGGGCCGGTTTTGGGATACGGGGAGGTGAAGAAGAGGATGGATGCGAGGTTGAGGC ATTTGGGGATTAGGGTTAAGAGGGTGATTGAAGAGGAGAAGTGTTTGATTCCTATGGGTGGGAGGTTGCCGGCGATGCCACAGAGGGTGGTTGGGTTCGG TGGGAATTCCGGGTTGGTTCATCCTTCTACTGGATATTTGGTTGCCCGAACTTTGGCTCTAGCCCCAACCCTAGCCGACGTAATAGCAGAGTGCCTAGGC TCAACCCGGATGATTCGAGGGATGTCGCTATACGACCGCATATGGAAAGGGTTATGGACATTCGACAGAAAATCAGAAAGAGAATTCTACAGATTCGGAA TGGAGACGTTGTTAAAGCTCGACCTTAACGGTACGAGGAGGTTCTTCGATGCCTTCTTCGATCTGGACCCTCACTATTGGCAAGGGTTTCTTTCTTCGAA GCTCTCGCTTCCGGAGCTCATGTGGTTGAGCCTTTCTCTCTTTGGACATGCCTCAAATCCTTCGAGGGTTGATATTGTGACCAAGTGCCCTTTGCCCTTG GCTAAAATGGTGGGAAATTTGGCTCTCGAGTCCATCTGA
AA sequence Show only first row Show all	>Lus10013298 pacid=23151362 polypeptide=Lus10013298 locus=Lus10013298.g ID=Lus10013298.BGIv1.0 annot-version=v1.0 MAATPLPLFSQLPTTKPPQFPHFSAAAQPPNFRRTTRVHSSTSSKFGSFLDLKPDTQPEPIHFPDLPFHHPNPTNWKSSQFDVIVIGAGPAGLRLAEQIS LRGIKVCSVDPSPLSSWPNNYGSWLDEFEPLDLSDRLHKNRPSATLATETWPIATVHIDDNNTKHLNRPYSRLNRTKLKTKLLHNCSLNGVVFKPAKVWE IRHAEFQCDVVCSDGEVLKASLVIDAGGFGSPFVQYDDVRGRLNEGYQIAHGILAEVEGGHPFDLDQMVLMDWRDSHMGNEPYLRKGNCEVPTFLYAMPF DSDLVFLEETSLVSRGPVLGYGEVKKRMDARLRHLGIRVKRVIEEEKCLIPMGGRLPAMPQRVVGFGGNSGLVHPSTGYLVARTLALAPTLADVIAECLG STRMIRGMSLYDRIWKGLWTFDRKSEREFYRFGMETLLKLDLNGTRRFFDAFFDLDPHYWQGFLSSKLSLPELMWLSLSLFGHASNPSRVDIVTKCPLPL AKMVGNLALESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	1.7	0.9018
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	2.0	0.9010
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	5.2	0.8968
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	6.5	0.8636
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	7.7	0.8961
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	9.8	0.8745
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	9.8	0.8594
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	10.3	0.7703
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	10.4	0.8864
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	14.1	0.8727

Compare expression of checked genes

Lus10013298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.