Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22350 626 / 0 ELM1 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) AT5G06180 494 / 7e-175 Protein of unknown function (DUF1022) (.1), Protein of unknown function (DUF1022) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005191 [exp] 836 / 0 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10017009 [exp] 280 / 8e-84 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021334 [exp] 159 / 3e-46 AT5G22350 275 / 4e-91 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197000 [exp] 677 / 0 AT5G22350 608 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.009G159900 [exp] 658 / 0 AT5G22350 629 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.016G075500 [exp] 542 / 0 AT5G22350 569 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF06258 [flax] [poplar] Mito_fiss_Elm1 Mitochondrial fission ELM1
Representative CDS sequence Show only first row Show all	>Lus10013300 pacid=23151397 polypeptide=Lus10013300 locus=Lus10013300.g ID=Lus10013300.BGIv1.0 annot-version=v1.0 ATGAAGCCTATAAGGTTACAGCTGCCGGATAGTCCAACCTCCGTTGGCGTCCCGGAGATCTTCGAAGGTGGCGCGCACAGCGTTGTCAGGCGCGCGGTTG TTATTGGAACTGGCTTTGCTGGGTCCGAGAATCAGAGCCTCGGTTTGGTTCGCGCGCTAGGACTCTATGACCAGCATGTTCTTTATAGGGTTACAAGACC AAGAGGTGGAATAAACGAGTGGTTGAAGTGTCTGCCAGTTTCTCTTCACAAATTTATATACTATATTATTAGTATCTGCTCTCGTGTTTTGGTGACTGCA CGGGCCAAGAAAATGTCACACATACCTTCGGGAAATGGTAGTGGTGCTGGATTGGCTTCAATTTTAGAAGCTGATGTGAAACAGATTGTGAACATGGCAC ATGATTGTTTCGAAAAGGATGGTCCACTTTTGGTTGTTGCATCTGGAAGAGATACGATATCTGTTGCAAGCTCTATAAAACGTTTAGCATCTGAAAAAGT TTTTGTTGTTCAGATTCAACATCCCAGGTCTCATCTTAACAGATTTGACTTGGTGATCACTCCACGTCATGATTATTTTGCTTTGACCCCTGAAGGCAAG GAACAAGTTCCACAATTTATGCGGAGATGGATAACACCACAGGAACCTCCAGATGAGCATGTGGTACTGACAACAGGAGCTTTGCATCAAATTGATTTTT CCACCCTTCGCAGTGCAGCTAGCGCTTGGCATGACGAGCTTGCCCCTCTGCCAAAGCCATTGCTAGTGGTTAATGTTGGAGGACCTGCAAGATATTGTCG TTATGGAGGTGACCTTGCAAAGCAGTTGTGTGACTCTCTGCTTAGTGTTCTTGCAACCTGTGGGAGTGTAAGAATAGCATTCTCAGAGAAAACCCCTCAA AAGGTTTCTACTGTAATAATCAAAGAACTCGCAAATAATCCGAAGGTCTTTATCTGGAATGGTGAAGAGCCAAATCCGTACATGGGACATTTAGCTTGGG CAGATGCATTTGTCGTTACTGCCGATTCAGTCAGCATGGTCAGCGAAGCTTGCACAACCGGTAAACCGGTCTATGTTATGGGATCTGAACGTTGCAAATG GAAGCTGGCGGAGTTCCACAAATCCTTGAAAGATCGAGGTGTGATTCGATCATTCACCGGCTCCGAGGATATATCGGACAGCTGGAGTTATCCTCCCTTG AACGACACGGCCGAAGCAGCACGAAAAGTCCTCGAAGCGCTGGCTCAACGCGACCTAACATTACGGCCGTAG
AA sequence Show only first row Show all	>Lus10013300 pacid=23151397 polypeptide=Lus10013300 locus=Lus10013300.g ID=Lus10013300.BGIv1.0 annot-version=v1.0 MKPIRLQLPDSPTSVGVPEIFEGGAHSVVRRAVVIGTGFAGSENQSLGLVRALGLYDQHVLYRVTRPRGGINEWLKCLPVSLHKFIYYIISICSRVLVTA RAKKMSHIPSGNGSGAGLASILEADVKQIVNMAHDCFEKDGPLLVVASGRDTISVASSIKRLASEKVFVVQIQHPRSHLNRFDLVITPRHDYFALTPEGK EQVPQFMRRWITPQEPPDEHVVLTTGALHQIDFSTLRSAASAWHDELAPLPKPLLVVNVGGPARYCRYGGDLAKQLCDSLLSVLATCGSVRIAFSEKTPQ KVSTVIIKELANNPKVFIWNGEEPNPYMGHLAWADAFVVTADSVSMVSEACTTGKPVYVMGSERCKWKLAEFHKSLKDRGVIRSFTGSEDISDSWSYPPL NDTAEAARKVLEALAQRDLTLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	0	1
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	3.3	0.9599
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	3.5	0.9672
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	4.0	0.9612
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10035348 [exp]	6.1	0.9491
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	6.5	0.9665
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	8.0	0.9501
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	11.7	0.9672
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	12.0	0.9574
AT3G21865		PEX22	peroxin 22 (.1)		Lus10027155 [exp]	12.6	0.9406
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	12.7	0.9608

Compare expression of checked genes

Lus10013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.