Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50620 273 / 1e-83 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G20280 150 / 2e-38 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G01460 45 / 0.0001 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005192 [exp] 968 / 0 AT3G20280 272 / 1e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10020162 [exp] 43 / 0.0007 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10022224 [exp] 43 / 0.0009 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358900 [exp] 482 / 2e-162 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013301 pacid=23151329 polypeptide=Lus10013301 locus=Lus10013301.g ID=Lus10013301.BGIv1.0 annot-version=v1.0 ATGGATCAGGAGGGGAACAACGGGGTTTCTATTCCTCCGGAATCGAATATAGATGGGGCCGGAGAAGCTGCTTCGGTCGGGCAGAAGAGGCCAATGGGGG AAGGTGGAGGGTTGGGTGTTAGTAGGCAGACCAAGAGGCTGAAGAATGGTGAAGGAGAGATGAAGAAAGTAGCTGAGATGGTACTTTTGTTGTCAGCCAT GGGGCAGATGCGAGGAGGGAGGACTCCCACTGATGCTGAGGTCAAGCTGATGGCTGAGGCAAGGGAGAAATTGGTGGAGATGTGTCAGAATTTTGCGCCT AAGGAGTTGGTCCCTGGACATGTGATTGGGAAAGTTATCGATGATCTGGGGCTCAATTGGAAGCTCAAGGACCAGAGGTTAGGGTTTCGTGGGTCCAGGT TGTCAATTAAGGAGAAGGTTTCCCTTGCAAAGCGTAAGATGGAAGAACCCAAGAAGTTCACCACACCTGGTGCACATGCATCTCAGACATCAAATCCAAG CTTTCCGACACACACAGTTCGCTCTCTTCCGTTGGACAAAGCAATTCATGCGCCGGTACCTTCTGGGAGTACTGTAGTTCATCCCCCCTTCACTCATGTT TCTGCAACATCTTCAGTTCCAGTAACATACCTGCAGGCTTCTAATGTTGAAGTAAAAGGATCTGCAATATCCATGGGACTACCCTTTAATCAGGCTGGAA GCACATCGGCAGTAGCAGCATCTAAGACACAGTTTGTTAAGATGGAAGGGGGACCAAATGGAAACACCTACACAGCTCAAGCAAATGCTTCTGTGAATCA TCCTCTGGTGAATGCTCCAACGTGGTCTTTACAGCCCAACTCTTTGTCTAAGATGGGGGCAGAAAGCAAGGTGCCGACTCATGCTCCAGTGAAGGCTGAG GGGATTGCTGACACAGGTGCACCACGAACAGCTCTTCAAACTGCTAGAGATCATACATTTAGGCCATTTATTACTCAAACAACATCGAGTATGCCAAGTG TGCATCAGCCTGTGCAAACTGTGAAGTCTGTTTATAGCACTCACAATGGGATTGCAAGAACTGTTCAGAAGTTACTGCAACCAAAGCTTCCACAATATCC CACATGGATTCCACCTTCAAGGGAATACATGAACAAGGCTTTGAGTTGCCAAAGTTGCAGTCTTACTATCAACGAGGTTGAAACTGTGGCAATTTGTGAT GCTTGTGAGAAAGGCTTTCACCTTAAATGCCTGGAATCTGCATTTCAGAAAGGTATTCCTAGAACTACCGAGTGGCACTGCATGAAATGCACATCACTAA GCAATGGAAAACCATTCCCTCCTAAATATGGCCGTGTCATGAGAAGCATGACCCCTCCAAAGGGGCCTGCAAGTGCTACCCATGGTGGACCTCAGTCCTT TTCAGATAAGAAACTAGTGAATATGGTTCAAAGGGGTAACACAATGTCAGAGCAGAGTGAGCTAGGTTTTGTTCATGCACCTGGTGCTTCAGGCAACAAC GTTCAGCGAAATGAGGAAGATGTTTCTCGTGCATCTTCTGGTTCAGAACACTATGTTGAGCAGAATGAGCAAGGTTTTTCTCATGCACCTTCTGCTTCTC ACCACAATGTCGAGCAAAGTGAGCCAGAAGTTGCTTGTCCACCTTCGGGTCCAGAACACAAATGA
AA sequence Show only first row Show all	>Lus10013301 pacid=23151329 polypeptide=Lus10013301 locus=Lus10013301.g ID=Lus10013301.BGIv1.0 annot-version=v1.0 MDQEGNNGVSIPPESNIDGAGEAASVGQKRPMGEGGGLGVSRQTKRLKNGEGEMKKVAEMVLLLSAMGQMRGGRTPTDAEVKLMAEAREKLVEMCQNFAP KELVPGHVIGKVIDDLGLNWKLKDQRLGFRGSRLSIKEKVSLAKRKMEEPKKFTTPGAHASQTSNPSFPTHTVRSLPLDKAIHAPVPSGSTVVHPPFTHV SATSSVPVTYLQASNVEVKGSAISMGLPFNQAGSTSAVAASKTQFVKMEGGPNGNTYTAQANASVNHPLVNAPTWSLQPNSLSKMGAESKVPTHAPVKAE GIADTGAPRTALQTARDHTFRPFITQTTSSMPSVHQPVQTVKSVYSTHNGIARTVQKLLQPKLPQYPTWIPPSREYMNKALSCQSCSLTINEVETVAICD ACEKGFHLKCLESAFQKGIPRTTEWHCMKCTSLSNGKPFPPKYGRVMRSMTPPKGPASATHGGPQSFSDKKLVNMVQRGNTMSEQSELGFVHAPGASGNN VQRNEEDVSRASSGSEHYVEQNEQGFSHAPSASHHNVEQSEPEVACPPSGPEHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	0	1
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	2.0	0.8879
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	2.4	0.9056
AT3G22430			unknown protein		Lus10041204 [exp]	3.5	0.8686
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	4.5	0.8598
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	5.5	0.8560
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	6.3	0.8516
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	6.5	0.7996
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	8.5	0.8857
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	13.0	0.8419
AT3G22430			unknown protein		Lus10041205 [exp]	14.1	0.8390

Compare expression of checked genes

Lus10013301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.