Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27350 131 / 6e-35 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 43 / 0.0002 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G39320 42 / 0.0002 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013303 [exp] 443 / 2e-155 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10005193 [exp] 443 / 4e-155 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160100 [exp] 222 / 8e-69 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 222 / 9e-69 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 42 / 0.0004 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10013302 pacid=23151333 polypeptide=Lus10013302 locus=Lus10013302.g ID=Lus10013302.BGIv1.0 annot-version=v1.0 ATGACTCGGATTTTGGTTCAGCGAGGCAGTAGTTCTTCTTCTTCCAATCAGAGCAGAGCGGGGCCTTCTTCAGCTGCCCGTCCCGAGACTCAGGCTACTG CTTCCTCCCATGTACTTCCAGTTTCGAAGGATGAGGAATTAATAAGCGACGAGGTGCAAGAGCAGATTGTTGCAGGTGAAATTGTGGAGCATAGTGGAAG TAGTGAAAGTAAGGTAATAAAGAATGATCTTCCAGAATGCAAGCTTGATGACCGAAATGAGGGTCTGAATGATGTTGTTGGGGGTACGCTTAATGATGTC ACTTTAGAGTCCGGAGACATAATAAAAGGTGAAATGAGAGAAAGGTCTGTGGTTGAGGATGAAAGTTCAAATGGAGTCTTCTCCCCTGCCGGTACCGGAA GAAGTCAACCACCTCCTCCTCCTGTCCCTCCTCCAAAACTTTTATCAGCAAGCTCTAATCCTAGGAGATTCTTGCCTGATTCTGTTCGAACTGGATCATC TAGAAGGGCACATGCTTGGCCTGTTGTTTCTGCTAGGAGTTCACCTACAGGGTCAAGGCCATCATCTCCCAGGTCCCATGTGGACAATGAGGGTTATAAC AGTGCCGATGAGCAAAATCCATGCTATAACTCCTCTTATAATGATCTGGAAAGAGAGCGCCAATTTGAGATTGACATTAGGCGGTCTAAAGGATTAGAAG TAAAAAGAATGCTGGAGGATGGAAATTGCCTTTTCCGTGCTGTAGCTGATCAAGTATATGGGGACTCTGAAGCTTACGATCTGATTAGGCAAATGTGCAT TGACTATATGTTGTTTGTGTTCATTAGGAGCGAGAAAGAGATCACTTTTCCCAATTTATAA
AA sequence Show only first row Show all	>Lus10013302 pacid=23151333 polypeptide=Lus10013302 locus=Lus10013302.g ID=Lus10013302.BGIv1.0 annot-version=v1.0 MTRILVQRGSSSSSSNQSRAGPSSAARPETQATASSHVLPVSKDEELISDEVQEQIVAGEIVEHSGSSESKVIKNDLPECKLDDRNEGLNDVVGGTLNDV TLESGDIIKGEMRERSVVEDESSNGVFSPAGTGRSQPPPPPVPPPKLLSASSNPRRFLPDSVRTGSSRRAHAWPVVSARSSPTGSRPSSPRSHVDNEGYN SADEQNPCYNSSYNDLERERQFEIDIRRSKGLEVKRMLEDGNCLFRAVADQVYGDSEAYDLIRQMCIDYMLFVFIRSEKEITFPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	0	1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	1.0	0.8082
AT3G06480			DEAD box RNA helicase family p...		Lus10009474 [exp]	5.1	0.7841
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	18.0	0.7221
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	18.7	0.7778
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10002572 [exp]	32.6	0.7533
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10021141 [exp]	34.8	0.7340
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	35.0	0.7326
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	45.3	0.7459
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	48.6	0.7226
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	52.0	0.7146

Compare expression of checked genes

Lus10013302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.