Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27350 384 / 4e-129 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 66 / 1e-11 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT5G04250 56 / 3e-08 Cysteine proteinases superfamily protein (.1.2) AT3G22260 54 / 6e-08 Cysteine proteinases superfamily protein (.1.2.3) AT5G03330 53 / 2e-07 Cysteine proteinases superfamily protein (.1.2) AT3G62940 51 / 1e-06 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 47 / 8e-06 Cysteine proteinases superfamily protein (.1) AT2G39320 42 / 0.0005 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005193 [exp] 788 / 0 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013302 [exp] 444 / 1e-155 AT2G27350 151 / 3e-42 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10005939 [exp] 64 / 1e-10 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10040897 [exp] 62 / 3e-10 AT3G62940 359 / 1e-124 Cysteine proteinases superfamily protein (.1.2.3) Lus10006255 [exp] 59 / 5e-09 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10037388 [exp] 56 / 2e-08 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 51 / 5e-07 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10001404 [exp] 52 / 6e-07 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 52 / 7e-07 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160100 [exp] 508 / 3e-177 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 488 / 2e-169 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 64 / 9e-11 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.008G036900 [exp] 55 / 1e-08 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 57 / 2e-08 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 54 / 6e-08 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036700 [exp] 53 / 3e-07 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.006G021700 [exp] 51 / 3e-07 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G134100 [exp] 51 / 1e-06 AT3G62940 338 / 9e-116 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G125900 [exp] 50 / 2e-06 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10013303 pacid=23151321 polypeptide=Lus10013303 locus=Lus10013303.g ID=Lus10013303.BGIv1.0 annot-version=v1.0 ATGACTCGGATTTTGGTTCAGCGAGGCAGTAGTTCTTCTTCTTCCAATCAGAGCAGAGCGGGGCCTTCTTCAGCTGCCCGTCCCGAGACTCAGGCTACTG CTTCCTCCCATGTACTTCCAGTTTCGAAGGATGAGGAATTAATAAGCGACGAGGTGCAAGAGCAGATTGTTGCAGGTGAAATTGTGGAGCATAGTGGAAG TAGTGAAAGTAAGGTAATAAAGAATGATCTTCCAGAATGCAAGCTTGATGACCGAAATGAGGGTCTGAATGATGTTGTTGGGGGTACGCTTAATGATGTC ACTTTAGAGTCCAGAGACATAATAGAAGGTGAAATGAGAGAAATGTCTGTGGTTGAGGATGAAAGTTCAAATGGAGTCTTCTCCCCTGCCGGTACCGGAA GAAGTCAACCACCTCCTCCTCCTGTCCCTCCTCCAAAACTTTTATCAGCAAGCTCTAATCCTAGGAGATTCTTGCCTGATTCTGTTCGAACTGGATCATC TAGAAGGGCACATGCTTGGCCTGTTGTTTCTGCTAGGAGTTCACCTACTGGGTCAAGGCCATCATCTCCCAGGTCCCATGTGGACAATGAGGGGTATAAC AGTGCCGATGAGCAAAATCCATGCTATAACTCCTCTTATAATGATCTGGAAAGAGAGCGCCAATTTGAGATTGACATTAGGCGGTCTAAAGGATTAGAAG TAAAAAGAATGCTGGAGGATGGAAATTGCCTTTTCCGTGCTGTAGCTGATCAAGTATATGGGGACTCTGAAGCTTACGATCTGATTAGGCAAATGTGCAT TGACTATATGGAGCGAGAAAGAGATCACTTTTCCCAATTTATAACCGAAGGTTTTTCCTCTTACTGCAAACGGAAGAGAAGAGACAAGGTCTATGGCAAC AACGTGGAGATCCAAGCAATGTCAGAGATGTATAATCGTCCGATCCACATTTATTCATATAGCACAGAGCCTATCAATATATTTCATGGAAACTACAATA CAGATACACCACCGAGAAATGTTGACAAGGATCAAGTGAAAGCCGCTATTAAGGCACAACAGGATCAGCAGATTGATAACGCACTTGTAGCTGAAGGGCG GTTTTACTCTGATCTCGAGCTTACCGAAAAGGAAATGGAGCGAATGGTAATGGAAGCTTCTCGAGCCGAGTATCTTGCCAATGATAAGTGGAAACCCCAA CTTGGCCGCAAAGAATCTTCTACCTCTGGCGCTGCTGAACCATCATCCTCCGGCGCTTACCCTTCGGGGAGTGAGACAAAGGCGGAAGGGCCACAAGAGC GCGGCGTACGAGACGGGTGCCTTAGTAAGAGCATGCAAATGGTGCTATCAATGGGATTCAGCTATCTGCAAGCAATCGAAGCTTATAGCATATTCGGGGA TGATGTCGACTCAATGGTTTGTTACCTCCTGGAAACTGACAGTAGCAGCCGACGCAAAAAAGGCAAGGCAACCGAGTGA
AA sequence Show only first row Show all	>Lus10013303 pacid=23151321 polypeptide=Lus10013303 locus=Lus10013303.g ID=Lus10013303.BGIv1.0 annot-version=v1.0 MTRILVQRGSSSSSSNQSRAGPSSAARPETQATASSHVLPVSKDEELISDEVQEQIVAGEIVEHSGSSESKVIKNDLPECKLDDRNEGLNDVVGGTLNDV TLESRDIIEGEMREMSVVEDESSNGVFSPAGTGRSQPPPPPVPPPKLLSASSNPRRFLPDSVRTGSSRRAHAWPVVSARSSPTGSRPSSPRSHVDNEGYN SADEQNPCYNSSYNDLERERQFEIDIRRSKGLEVKRMLEDGNCLFRAVADQVYGDSEAYDLIRQMCIDYMERERDHFSQFITEGFSSYCKRKRRDKVYGN NVEIQAMSEMYNRPIHIYSYSTEPINIFHGNYNTDTPPRNVDKDQVKAAIKAQQDQQIDNALVAEGRFYSDLELTEKEMERMVMEASRAEYLANDKWKPQ LGRKESSTSGAAEPSSSGAYPSGSETKAEGPQERGVRDGCLSKSMQMVLSMGFSYLQAIEAYSIFGDDVDSMVCYLLETDSSSRRKKGKATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	0	1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	1.0	0.8082
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	12.7	0.5821
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	14.6	0.6742
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	16.7	0.6108
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10027776 [exp]	21.5	0.5182
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10007422 [exp]	29.3	0.5552
AT5G26990			Drought-responsive family prot...		Lus10017956 [exp]	36.8	0.5959
					Lus10039535 [exp]	44.8	0.5589
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	45.7	0.5578
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	50.6	0.5690

Compare expression of checked genes

Lus10013303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.