Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44330 700 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005197 [exp] 959 / 0 AT3G44330 766 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160400 [exp] 771 / 0 AT3G44330 805 / 0.0 unknown protein Potri.004G198200 [exp] 754 / 0 AT3G44330 820 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF05450 [flax] [poplar] Nicastrin Nicastrin
Representative CDS sequence Show only first row Show all	>Lus10013307 pacid=23151394 polypeptide=Lus10013307 locus=Lus10013307.g ID=Lus10013307.BGIv1.0 annot-version=v1.0 ATGTATTCTATGAAGCTGCGCAGCTCCGATGTGCTGACCTCCTCCTTCTACTCCGTAATCCCACTCCTCTTCTTACTCCTTACCTGCGTCGAGCTCTCCG ACGCCGCATCCTTCGTCGACGTCTACCGTCTGGTCCAGTACGACATATCCGGCGTCTCGTTTGGATCTCGCCTCGCGGCACTCAGTCACCACGCAGTCTC TTTGAATTCATCGTCCGGCGCCGACTTCTCTCGCTCCGTTCTCATCATTCCCCTGCGTGAACTGAACGTCTCTTTTGTCAAAGAATATATCTCAGAAAGA AAGCCTCTGGGTGGATTGTTGCTTCTACTTCCTCAAATGTTTAATTTTGAGAAGGGAGATACTGCGGGTGATACTAAGGATGACAGTGATGAGAAGGAGC TATTTGGGAATGTTTTGACTGAGCTAGAAGCAATCCTGATACATGCTAATATACCTTATCCCGTGTATTTTGCCTTTGAGCATGATGACATAGAAACTGT ATTGACTGACATCGAGAGGAATGATGTCAATGGTCCAGCTGCTTCTGCAACTAATGGCGGATACAAGTTTGTTGTCTCGGCTCCAGAGCCTAAGAAGGTT GCATCTCCAATCATCACAAACATTCAGGGATGGTTGCCAGGATTGAAACCAGATGGAGATACAAATCAACTTCCGACGATTGCCATTGTTGCTTCATACG ACACCTTTGGTGCTGCTCCTGCTTTATCAGTTGGAAGTGATAGCAATGGAAGCGGTGTTGTGGCTCTTCTAGAAATTGCTAGGTTATTTTCTCTACTTTA TTCCAATCCAAAGACAAGGGGAAAGTACAACTTACTTTTTGGACTGACTTGTGGTGGACCGTACAACTACAATGGAACTAACAAGTGGCTTAGGACCTTT GATCAACGTTTACGAGAGAGCATTGATTATGCTATTTGCTTAAATAGCATTAGCTCCTGGGATGAAAAATTGTGGGTTCACGTGTCAAAACCTGCTGAAA ATGCCTATGTGAAACAAATTTATGAACGACTATCTTCTGTAGCAGGAGAACTTGGTTTTGAAGTTGGTCTCAAGCACAAGAAAATCAATATTTCTAACCC TCGACGCGCGTATAAAGAGACACCCGAACTGCTAAAGAGCACTGGAAGTCTGTCTGATAACAGATATCTTGTAAACGAAGATTCAATCACGAGAAGTATC AAATTAGTTGCTGAGAGTATTGCGAGGCATATATACGGTCAGCAGGAGAAGACTCTGGTTTTCACAGACGGTAGCAGTTTGGCTGTCGATCGGTCTTACA TTAGATCATGGCTTGATCTTTTGTCACGAACACCTCGAGTGGCACCATTTCTTACAAAGAATGATCCTTTGGTATCAGCATTGAGAAAGGAGTTGGCCGA GCATACCCAAGAAGTAAGTGTGCAACACGAGCCGCTCGATGGGATGTTCACATTTTATGATATAACCAAAGCCAAGCTAAACATATATCAGGTGGCCAGC GTTACATTAGATTTCCTACTGCTCCTGGCAGTCGGATCGTACCTAACAGTACTCTTCAGTTTTCTCGTCATCACAACCAGGGGTCTCGACGATCTCATCA GCATATTCAGACGTCCTCCATCCCGGAAATCAAAAACCGGTTGA
AA sequence Show only first row Show all	>Lus10013307 pacid=23151394 polypeptide=Lus10013307 locus=Lus10013307.g ID=Lus10013307.BGIv1.0 annot-version=v1.0 MYSMKLRSSDVLTSSFYSVIPLLFLLLTCVELSDAASFVDVYRLVQYDISGVSFGSRLAALSHHAVSLNSSSGADFSRSVLIIPLRELNVSFVKEYISER KPLGGLLLLLPQMFNFEKGDTAGDTKDDSDEKELFGNVLTELEAILIHANIPYPVYFAFEHDDIETVLTDIERNDVNGPAASATNGGYKFVVSAPEPKKV ASPIITNIQGWLPGLKPDGDTNQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIARLFSLLYSNPKTRGKYNLLFGLTCGGPYNYNGTNKWLRTF DQRLRESIDYAICLNSISSWDEKLWVHVSKPAENAYVKQIYERLSSVAGELGFEVGLKHKKINISNPRRAYKETPELLKSTGSLSDNRYLVNEDSITRSI KLVAESIARHIYGQQEKTLVFTDGSSLAVDRSYIRSWLDLLSRTPRVAPFLTKNDPLVSALRKELAEHTQEVSVQHEPLDGMFTFYDITKAKLNIYQVAS VTLDFLLLLAVGSYLTVLFSFLVITTRGLDDLISIFRRPPSRKSKTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44330			unknown protein		Lus10013307 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	3.9	0.9101
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	5.4	0.9219
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	6.6	0.8572
AT1G63770			Peptidase M1 family protein (....		Lus10024641 [exp]	7.9	0.8461
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	9.0	0.8655
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	9.7	0.9164
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	9.8	0.9089
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	11.0	0.8815
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	14.9	0.8915
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	16.6	0.8309

Compare expression of checked genes

Lus10013307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.