Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22320 325 / 2e-107 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G19680 70 / 4e-13 Leucine-rich repeat (LRR) family protein (.1) AT2G34680 57 / 3e-08 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT4G35470 54 / 2e-07 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G15410 51 / 1e-06 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G03260 49 / 5e-06 Outer arm dynein light chain 1 protein (.1.2) AT1G07390 49 / 7e-06 AtRLP1 receptor like protein 1 (.1.2.3) AT1G78230 47 / 2e-05 Outer arm dynein light chain 1 protein (.1) AT4G26050 45 / 6e-05 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G17440 44 / 0.0001 PIRL5 plant intracellular ras group-related LRR 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005198 [exp] 602 / 0 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10010891 [exp] 62 / 2e-10 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10012715 [exp] 62 / 3e-10 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10016684 [exp] 62 / 7e-10 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035976 [exp] 60 / 2e-09 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10032668 [exp] 58 / 2e-09 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10031861 [exp] 52 / 4e-07 AT2G30105 437 / 7e-154 unknown protein Lus10038534 [exp] 53 / 5e-07 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 52 / 7e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199200 [exp] 399 / 6e-136 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.006G163900 [exp] 67 / 7e-12 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G086200 [exp] 66 / 1e-11 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.007G065000 [exp] 61 / 9e-10 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 59 / 5e-09 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.011G121700 [exp] 56 / 4e-08 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.002G097800 [exp] 54 / 1e-07 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.006G072700 [exp] 53 / 2e-07 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.011G090200 [exp] 53 / 3e-07 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.005G164000 [exp] 52 / 8e-07 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10013308 pacid=23151415 polypeptide=Lus10013308 locus=Lus10013308.g ID=Lus10013308.BGIv1.0 annot-version=v1.0 ATGGTTCGCCTGAGCAGAGAGCAAGTTTTGAAGGACCAAAGAACATCCGACCCTGACTCCATCACTTCTCTCTCCCTCACTCACAAAACTCTCTCCGATG TTTCTTGCCTCAGTGAGTTCAAAAACCTTGAGCGCCTCGACCTTGCTTTCAACAATCTAACTTCGCTCGAGGGATTGAAGTCGTGCGTCAACTTGAAGTG GCTATCCGTTGTGCAAAACAAACTGCAGAGCTTAAAAGGAATCGAATCACTTCCTAATCTCACTGTATTGAATGCTGGGAAAAACAAGCTTAAGTCCATG GATGAGGTGAAATCTGTTGTGAGCTTGAGAGCATTGATCCTAAATGATAATGAGATTGTTTCGATTTGCAAACTAGATCAGTTGAAAGAATTGAACACGC TCGTGCTCTCTAGGAATCCAATCCGTGAAATTGGAGAATCCCTTTCGAAGGCAAAATCCCTAACAAAGATTTCTCTTTCACACTGCCGACTTCAGGCCAT CGGTTCTTCGCTCAAGGGATGCATTGAGTTGAAAGAACTCAGACTTTCACACAACGAAATTAACACTCTTCCAAGTGAACTGGCCAGTAACAAGAAACTC CAGAATCTGGACATGGGGAACAATGGCATCACAAGATGGTCAGATTTGAAGGTCCTGAGCTCAGTAGTTGATGTTAAAAACCTCAACTTGCTAGGGAATC CTATAGCTGACAAAGATAAGTTACTGAAGAAGATAAAAAAGCTGTTGCCGAATCTGCAAATCTTCAATTCCAAACCAATAGATAAATTGAAAGCAAGTGG TAAGACTAACAGATTCGAAGGTGGAGTTCATGCTCCAATACTCGACGAAAATGAGAAGGATTTCGCGAAGCAAAACAGGACCATCGCCCATGAAAAGGAT CATGAAGAAAGCAGCAAGCTTGACGATGCTACTACCAAGGGACAATCGGATAAAACGGATGATAAGAAAAGGAAGAGAGAAAACGTTAACAGTTTCGATG TAGAGAACTTGAAGCAGATAAAAAGGAGAAGTGAGGATGAGCTAGTTGCCAGAAATGTGGCTAAAGAATCGACCAAGGAACTCGGAGAGCTTGATGTTAT CGACAGTGGAGAAATGTCATTTGCAGACCTTTTTGCTGGAAGGGAGAAGACAATGGCGGAGGACAGAGCTGTAGAAGACAAGAATTCTACTGGTAGCTTC GTTACCTCCTCGACAAAGAAGAAGAAGAAGAAAAACAAAACCAGCGATTCAAGCTTCGGTGATCAGATGTCGTCTGAGCTCGAAATCGGCCTCGGTGGAC CATCAGCATGGGAGTGA
AA sequence Show only first row Show all	>Lus10013308 pacid=23151415 polypeptide=Lus10013308 locus=Lus10013308.g ID=Lus10013308.BGIv1.0 annot-version=v1.0 MVRLSREQVLKDQRTSDPDSITSLSLTHKTLSDVSCLSEFKNLERLDLAFNNLTSLEGLKSCVNLKWLSVVQNKLQSLKGIESLPNLTVLNAGKNKLKSM DEVKSVVSLRALILNDNEIVSICKLDQLKELNTLVLSRNPIREIGESLSKAKSLTKISLSHCRLQAIGSSLKGCIELKELRLSHNEINTLPSELASNKKL QNLDMGNNGITRWSDLKVLSSVVDVKNLNLLGNPIADKDKLLKKIKKLLPNLQIFNSKPIDKLKASGKTNRFEGGVHAPILDENEKDFAKQNRTIAHEKD HEESSKLDDATTKGQSDKTDDKKRKRENVNSFDVENLKQIKRRSEDELVARNVAKESTKELGELDVIDSGEMSFADLFAGREKTMAEDRAVEDKNSTGSF VTSSTKKKKKKNKTSDSSFGDQMSSELEIGLGGPSAWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	0	1
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	4.0	0.8822
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	6.2	0.8925
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	6.7	0.8294
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	6.9	0.8708
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	10.6	0.8547
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	10.9	0.8716
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	17.9	0.8759
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	21.6	0.8510
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	23.4	0.8771
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	24.2	0.8771

Compare expression of checked genes

Lus10013308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.