Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44326 189 / 3e-57 F-box family protein (.1) AT2G27310 179 / 1e-53 F-box family protein (.1) AT2G36090 169 / 6e-50 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021330 [exp] 170 / 5e-50 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 164 / 2e-47 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10028024 [exp] 93 / 6e-21 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 91 / 3e-20 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10031031 [exp] 46 / 2e-05 AT5G04010 106 / 4e-27 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199300 [exp] 219 / 7e-69 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 203 / 9e-63 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.006G208400 [exp] 184 / 1e-55 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.002G054500 [exp] 102 / 2e-24 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 94 / 4e-21 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.001G452000 [exp] 92 / 1e-20 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.017G092800 [exp] 46 / 1e-05 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.004G119500 [exp] 44 / 7e-05 AT5G39250 347 / 8e-122 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013309 pacid=23151417 polypeptide=Lus10013309 locus=Lus10013309.g ID=Lus10013309.BGIv1.0 annot-version=v1.0 ATGGTCCCTACTCTGCTACACGTAGATCCTTCTTCATCATCACCGGACGCCATCTCAGCTGTCCATCCAGACATCCTCCGAGCCCACATCCTCAACCGTC TCGACGGCCCAACTCTCGCCTCCTTATCCTGCGCCTCACCGGACCTCCGCTCTCTCTCCGCCGACGACCACCTCTGGCGAAACATCTGCACCGCCACATG GCCGTCTGTCAACCACCCCAAGCTCGCCTCCTTAATCCCGTCTTTCAACCACAGCTACCGCTCCTTCTTCTCCGACTCATATCCAGCCGTCCAGACCCGG GTCGGTGGTGGAACCACCTACCCGAATCCGACCCGACCCAGATTATTAATCTCCGCCGTCGACATCTACTACGGGGACAAACCGATCTTCTCGAAAGTGA TTGAGACGGAGACGGCGACGACGTGGTTCCTAACGGCGCCGTTTCGAATCGAGGCGCTGGAATCGAAAGAGGTGGTCCCCACGGGGGTACTGAGGAAAGT GACGGCTGGGGGGCGTCAGAATCGGGAGGAGTGGCTGAGAGAGGTGGAGGAGAATTTGAGAGTGAGCTGGATCGTGATCGATCCGGTGAAGCGGAGGGCG GCGAATTTTTCGAGCGGAGGAGCGGTGGAGGTGCGGCGGCACTGGTTCACCGGAGAAGCGCAGGTGAAGTTTTCGTGCGGTGGGGAGGAAGATGAGTGCG GGGTGGTGGTCACGTGCGGCGGGGAGGAGGAGGGAGGAGAGGTGCACGTGAGGGAGGTTTACTTGGGGATGGAGGATATGGAAGGGAGGAGTTTGAGCGG GGAGGGCAGTTTGGGGATTTTGGATGACGCGGTGGGCGGCGGCGGACGGCAGCGGGGGAGGAAGATGACGAGGGAGGAAGGGGAAGAGAGGTACGAGGAG TTCCTGGAGAGGAAGAGGGAGGTGAAACGCAGAGTTGAGAGGAGAGAGAAGGTTTTGGATACGGTTTGTGTTGTTAGTGGGGTCGGGTTTTTCTTGGCTT TGTTGTGCTTTTTGTTTATGTGA
AA sequence Show only first row Show all	>Lus10013309 pacid=23151417 polypeptide=Lus10013309 locus=Lus10013309.g ID=Lus10013309.BGIv1.0 annot-version=v1.0 MVPTLLHVDPSSSSPDAISAVHPDILRAHILNRLDGPTLASLSCASPDLRSLSADDHLWRNICTATWPSVNHPKLASLIPSFNHSYRSFFSDSYPAVQTR VGGGTTYPNPTRPRLLISAVDIYYGDKPIFSKVIETETATTWFLTAPFRIEALESKEVVPTGVLRKVTAGGRQNREEWLREVEENLRVSWIVIDPVKRRA ANFSSGGAVEVRRHWFTGEAQVKFSCGGEEDECGVVVTCGGEEEGGEVHVREVYLGMEDMEGRSLSGEGSLGILDDAVGGGGRQRGRKMTREEGEERYEE FLERKREVKRRVERREKVLDTVCVVSGVGFFLALLCFLFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	1.7	0.9216
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	1.7	0.9380
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	2.4	0.9166
					Lus10006091 [exp]	4.2	0.9359
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	4.5	0.8973
					Lus10025243 [exp]	7.4	0.9170
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019182 [exp]	8.6	0.8149
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	9.8	0.8558
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	9.9	0.9066
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	11.7	0.9208

Compare expression of checked genes

Lus10013309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.