Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08380 190 / 4e-63 PSAO photosystem I subunit O (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005199 [exp] 230 / 9e-79 AT1G08380 203 / 3e-68 photosystem I subunit O (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199400 [exp] 186 / 1e-61 AT1G08380 197 / 3e-66 photosystem I subunit O (.1) Potri.009G160800 [exp] 181 / 1e-59 AT1G08380 198 / 2e-66 photosystem I subunit O (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013310 pacid=23151385 polypeptide=Lus10013310 locus=Lus10013310.g ID=Lus10013310.BGIv1.0 annot-version=v1.0 ATGGCGACAGCATTCTCCGGCGCCGGCACCGTCCTAGGATTGGGAAGCAGCTCCCTCTCCTCCTCCTCCAAGGTCTCTTTCTCTCACTCCTCAGGGTTTT TGAAGCCGGCAGTTGGAGTGAGGAGTCCCCTGACCGTGGGTGTCAGAAGTGGCGACAGTTTCAAGTGCAATAGCTTCCAGAGGGACTGGCTGCGTAGGGA CCTGAACGTGATCGGGTTCGGACTCATCGGGTGGCTTGCTCCATCGAGCATTCCGGCTATCGACGGGAAGAGCTTGACTGGTCTCTTCTTCGACAGCATT GGGACTGAGCTGGCCCACTTCCCTACTCCTCCTGCCCTCACTTCTCAGTTCTGGTTGTGGTTGGTGACATGGCATCTGGGTTTGTTCATCTGCCTGACAT TTGGACAGATTGGGTTCAAGGGAAGGACTGAGGATTACTTCGAGAAATGA
AA sequence Show only first row Show all	>Lus10013310 pacid=23151385 polypeptide=Lus10013310 locus=Lus10013310.g ID=Lus10013310.BGIv1.0 annot-version=v1.0 MATAFSGAGTVLGLGSSSLSSSSKVSFSHSSGFLKPAVGVRSPLTVGVRSGDSFKCNSFQRDWLRRDLNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSI GTELAHFPTPPALTSQFWLWLVTWHLGLFICLTFGQIGFKGRTEDYFEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	0	1
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	3.6	0.9691
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	3.7	0.9682
					Lus10025623 [exp]	4.6	0.9433
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	5.1	0.9519
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	6.3	0.9550
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	7.1	0.9625
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	8.2	0.9476
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	8.2	0.9617
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	8.5	0.9596
AT1G51400			Photosystem II 5 kD protein (....		Lus10030132 [exp]	8.9	0.9435

Compare expression of checked genes

Lus10013310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.