Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 244 / 4e-73 unknown protein AT5G22310 151 / 7e-40 unknown protein AT5G41620 126 / 1e-30 unknown protein AT1G50660 116 / 2e-27 unknown protein AT1G64180 107 / 1e-24 intracellular protein transport protein USO1-related (.1) AT3G20350 107 / 3e-24 unknown protein AT2G46250 84 / 6e-17 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013311 [exp] 820 / 0 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 779 / 0 AT3G11590 322 / 1e-101 unknown protein Lus10021324 [exp] 224 / 2e-64 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 219 / 2e-63 AT3G11590 587 / 0.0 unknown protein Lus10017543 [exp] 140 / 2e-35 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 138 / 8e-35 AT5G41620 497 / 4e-170 unknown protein Lus10032637 [exp] 121 / 7e-29 AT1G50660 625 / 0.0 unknown protein Lus10021521 [exp] 121 / 1e-28 AT1G50660 750 / 0.0 unknown protein Lus10043111 [exp] 118 / 7e-28 AT1G50660 616 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199500 [exp] 344 / 5e-111 AT3G11590 399 / 6e-131 unknown protein Potri.009G160900 [exp] 341 / 2e-110 AT3G11590 399 / 9e-132 unknown protein Potri.016G074300 [exp] 255 / 7e-77 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 234 / 4e-69 AT3G11590 582 / 0.0 unknown protein Potri.003G135000 [exp] 161 / 2e-42 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 157 / 3e-41 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 149 / 2e-38 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 148 / 4e-38 AT5G41620 345 / 6e-110 unknown protein Potri.011G090100 [exp] 123 / 2e-29 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 103 / 3e-23 AT1G50660 390 / 1e-126 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09636 [flax] [poplar] XkdW XkdW protein
Representative CDS sequence Show only first row Show all	>Lus10013312 pacid=23151349 polypeptide=Lus10013312 locus=Lus10013312.g ID=Lus10013312.BGIv1.0 annot-version=v1.0 ATGAATAAGGTGGAGCATTTTAGCGGAAGGAGGAAGGAAGATTCTTCAGAGGATTCAAAGGAAGATTCTTCAAATGAAAAGAAGTTGCTGCCTGGATTGT CAGATCCATCGCCATTGCTGGAAGATGGTACGGATCGGAGGAGGAATGGTCAGAGAGGAAGAAGAAGGTCGTCATCAGCTGTGACGAAGAACATGCTTCA GCTTGCTGATTATAATCCCAGTTTGATGGAGGTGGAGAGTCAAGCAAAGGTGGGGAAACCACAAATGGAATGTGTAACCGCCACCAAAACCAAGCTGAAA GACATCAGCAATGGCTTACTAACATCCAAAGAGCTTCTCAAAGTAATGAACCGTCTATGGGGTTTCGACGACCAAGGTTCATCAGGAATGTCACTTCTTT CAGCTCTCAAGTCCGAGATAGACAGGGCAAGGATCCAGGTGAACCACCTGATCAAAGACCACCAAAAGTCTAATCGCCATGAGATCGACACCCTCCTCAA AACTTTTGAGGAAGAGAAGGCGACATGGAGGAGCAAAGAGCGATCTCGAATCCGCAACGCCATATCTTGCATTGCAGAGGAGCTCGAAGTGGAGAGAAAG CTAAGGAAGCAGACCGAGAGGCTGAACAAGAGGCTAGGGAACGAGCTGGCCGAAACTAAGGTGGCGTTGCGAAAGGTGAGGGAAGAGCTTGAGACCGAGA AGAGGGCCAAGGAGATATTGGAGCAAGTGTGTGATGAGTTGGCTAGTGGGGTTGGAGGAGAAGATAGAGATATAGTTGAGGAAGTGAAGAGGGAGACTGC GAAAGTTCGAGAGGAAGTTGAGAAAGAAAGGGAGATGCTTTTGCTTGCTGATGTTCTTAGAGAGGAAAGGGTTCAGATGAAGCTATCCGAGGCGAAGTAT CTTTTCGAAGAGAAGAATGCTGCTGTCGATCGGTTGAAGAATGAGCTTGAGTGTTACTTGTATGGCAAGGAAGATCATCATGGAGAGGAGTACTCGCGTC CTGATTATGATAGGATCAAGGAGCTCGAGGCTTACTTGAAGGAGATCGAATTCGGGGCGTTGCAGAAGTCGAGGGAGAGTCTTGATGCAGAAGTTATCGA GGGGGGTGATGATGATTCGGGTGATGATAGTGAACTTCACTCTATAGAGTTGACCATGGAGAACAACAACAACAACAACAAGCCTTTAAAATGGAGCTTT GAAGGTATAGTGCTTGACAACCCGAAGAGGATTTCGGTTGATAAGGACATGAAAGGGATTGAATGGGGGAGCATTTCCTTGTACAAGAAGGATTCAAATT CCGACAATGTTGTCCTATTGGATGCTGATGCTATAAACCATGAGATTCAGCAAATGCTGGATAACGAAAGACAATTATCCGGTGGTGGTCCCGGTCTAGA CGAGAAGGCCAAGAGTCTTAGAGACTTGTTGTTGTTATCAGGATCCAGGAGAGAATCATCAGCATCAGCACAAAGTGCTTCAGGGATTATTATTCCTCTG CAGGAGCTGAACAATATTGGTGGTTCTGGGAATTTGCCGGATCACCGAGTTGTTGGGGTGAAAGGCGAAAGAAGGCTATCGACGAGTTCGAAATAG
AA sequence Show only first row Show all	>Lus10013312 pacid=23151349 polypeptide=Lus10013312 locus=Lus10013312.g ID=Lus10013312.BGIv1.0 annot-version=v1.0 MNKVEHFSGRRKEDSSEDSKEDSSNEKKLLPGLSDPSPLLEDGTDRRRNGQRGRRRSSSAVTKNMLQLADYNPSLMEVESQAKVGKPQMECVTATKTKLK DISNGLLTSKELLKVMNRLWGFDDQGSSGMSLLSALKSEIDRARIQVNHLIKDHQKSNRHEIDTLLKTFEEEKATWRSKERSRIRNAISCIAEELEVERK LRKQTERLNKRLGNELAETKVALRKVREELETEKRAKEILEQVCDELASGVGGEDRDIVEEVKRETAKVREEVEKEREMLLLADVLREERVQMKLSEAKY LFEEKNAAVDRLKNELECYLYGKEDHHGEEYSRPDYDRIKELEAYLKEIEFGALQKSRESLDAEVIEGGDDDSGDDSELHSIELTMENNNNNNKPLKWSF EGIVLDNPKRISVDKDMKGIEWGSISLYKKDSNSDNVVLLDADAINHEIQQMLDNERQLSGGGPGLDEKAKSLRDLLLLSGSRRESSASAQSASGIIIPL QELNNIGGSGNLPDHRVVGVKGERRLSTSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11590			unknown protein		Lus10013312 [exp]	0	1
AT3G11590			unknown protein		Lus10013311 [exp]	1.0	0.9831
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	9.0	0.8759
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	11.2	0.8831
AT5G50335			unknown protein		Lus10001469 [exp]	11.5	0.8965
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	15.2	0.8993
AT4G14090			UDP-Glycosyltransferase superf...		Lus10040591 [exp]	16.4	0.9061
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	18.7	0.9048
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	19.5	0.9171
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	21.6	0.8855
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	21.7	0.9046

Compare expression of checked genes

Lus10013312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.