Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 562 / 0 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 472 / 3e-168 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 462 / 2e-164 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44310 454 / 6e-161 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 76 / 1e-15 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 61 / 3e-10 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT4G08790 58 / 2e-09 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G64370 53 / 2e-07 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005201 [exp] 696 / 0 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 276 / 3e-89 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10018449 [exp] 270 / 1e-87 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 266 / 3e-86 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10016999 [exp] 89 / 9e-21 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10026464 [exp] 73 / 5e-14 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 70 / 4e-13 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10011198 [exp] 57 / 5e-10 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10004862 [exp] 58 / 4e-09 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199600 [exp] 621 / 0 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.006G207700 [exp] 365 / 4e-125 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.016G074200 [exp] 364 / 3e-124 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G201400 [exp] 69 / 4e-13 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G222900 [exp] 66 / 6e-12 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.008G047100 [exp] 66 / 1e-11 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.010G214600 [exp] 57 / 7e-09 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.009G161001 [exp] 68 / 2e-07 AT5G22300 53 / 3e-07 nitrilase 4 (.1) Potri.007G115900 [exp] 51 / 6e-07 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10013313 pacid=23151372 polypeptide=Lus10013313 locus=Lus10013313.g ID=Lus10013313.BGIv1.0 annot-version=v1.0 ATGTCGCTAGTCAACGCAGCTCTCCCTTCCGACGGCCCAATCTTCGCCGAAGTTGACATGGGTTCCGATTCTTCCGCCCCCGTCGTCAGAGCCACCGTCG TCCAGGCCTCCACCATCTTCTACGACACTCCCGCCACTCTGGATAAGGCTGAAAGGCTGCTGGCGGAAGCAGCTGGGTACGGCTCCCAGCTTGTAGTGTT CCCAGAGGCGTTCATCGGTGGATACCCTCGTGGTTCGAATTTCGGAGCTGCCATTGGGAATCGGACGCCTAAGGGTAGAGAGGAGTTCCGCAAATATCAT GCTGCTGCCATTGATGTTCCTGGTCCGGAAGTGGACAGATTGGCTGCAATGGCTGGGAAGTACAAGACGTTCTTGGTGATGGGTGTGATAGAGAGGGATG GATACACACTCTACTGCACCGTGCTATTCTTTGATGCTCAAGGTCATTACCTCGGGAAGCACAGGAAGATGATGCCTACTGCAGTGGAGCGCATCATTTG GGGGTTTGGAGACGGCTCGACCATTCCGGTTTTCGATACTCCTGTTGGGAAGATCGGCGCTGCCATCTGCTGGGAGAACAGAATGCCACTTCTCAGGACT GCAATGTATGGAAAGGGCATTGAAATATATTGCGCACCGACAGCCGATTCGAGGCCAACTTGGACAGCATCAATGACTCACATCGCCCTCGAGGGGGGAT GTTTCGTACTCTCCGCCAATCAATTCTGTCGCCGGAAAGATTACCCTCCCGCTCCAGAATACGTATTTGCAGGCACGGAGGATGAACTCAACCCGGATTC CGTCGTCTGTGCCGGAGGCAGTGTCATAATCTCACCAATGGGAACCGTTCTAGCCGGACCCAATTTCGAAGGAGAGGCTCTGATCTCTGCCGATTTAGAT CTTGGCGAAATCGCGAGGGCGAAATTCGACTTCGACGTGGTGGGGCATTACGCGAGGCCGGAAGTGCTGAGCTTAACTGTAAATGACCATCCAGCAAGAC CAGTTATATACACAGCATCAGATGAAGCGAAAACTGAGAGCTATGAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10013313 pacid=23151372 polypeptide=Lus10013313 locus=Lus10013313.g ID=Lus10013313.BGIv1.0 annot-version=v1.0 MSLVNAALPSDGPIFAEVDMGSDSSAPVVRATVVQASTIFYDTPATLDKAERLLAEAAGYGSQLVVFPEAFIGGYPRGSNFGAAIGNRTPKGREEFRKYH AAAIDVPGPEVDRLAAMAGKYKTFLVMGVIERDGYTLYCTVLFFDAQGHYLGKHRKMMPTAVERIIWGFGDGSTIPVFDTPVGKIGAAICWENRMPLLRT AMYGKGIEIYCAPTADSRPTWTASMTHIALEGGCFVLSANQFCRRKDYPPAPEYVFAGTEDELNPDSVVCAGGSVIISPMGTVLAGPNFEGEALISADLD LGEIARAKFDFDVVGHYARPEVLSLTVNDHPARPVIYTASDEAKTESYEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	1.0	0.8671
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	6.2	0.8204
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	8.1	0.8004
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	8.2	0.7942
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	11.4	0.7855
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	19.8	0.7627
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10013797 [exp]	20.0	0.7376
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	23.7	0.7555
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	24.0	0.7368
AT3G46450			SEC14 cytosolic factor family ...		Lus10004952 [exp]	28.5	0.7520

Compare expression of checked genes

Lus10013313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.