Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06640 166 / 1e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06620 164 / 2e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 164 / 5e-48 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 162 / 6e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03400 160 / 6e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 159 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 157 / 9e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 150 / 1e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 150 / 7e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 149 / 1e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009238 [exp] 215 / 9e-68 AT1G06640 250 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10022190 [exp] 180 / 5e-55 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000612 [exp] 177 / 3e-53 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022195 [exp] 174 / 4e-52 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 171 / 6e-51 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 171 / 8e-51 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 171 / 1e-50 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 167 / 2e-49 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10033879 [exp] 166 / 5e-49 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073100 [exp] 201 / 3e-62 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G083100 [exp] 180 / 3e-54 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 180 / 4e-54 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 178 / 2e-53 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 178 / 2e-53 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 175 / 2e-52 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 169 / 5e-50 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 167 / 2e-49 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 167 / 2e-49 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 167 / 4e-49 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013314 pacid=23151342 polypeptide=Lus10013314 locus=Lus10013314.g ID=Lus10013314.BGIv1.0 annot-version=v1.0 ATGGCATCACCACCGGCCTCCTTCTTCTCGCCCAGCGACCCCGGCAGCCTCGCCGCAGCCAAAGAAGCTGTGACCCAATTCGACAAGACGAAAGCCGGCG TCAAGGGTCTCGTAGACACCGGCATAACCAAAGTCCCCATACTCTTCCGGCTCTCCCCTAAGACCGCTTCCCTGTACGACACCAAATCATACCAAAACGA CACCGTTACTGCATCATCCCCTGCCGTGATCGACTTAAAAGGTGTGGCAGCAGGGGGCGCGCGTCGGGCGGAAGTGGTTGATGAGATCCGACGTCGGTCG GCCGGGATGGGAGTGTTCCAGGTGGTGAACCACGGGGTGGCAGGGAGCGAGATGGAGGAGATGCTGTCGAAAGCGCGTGAGTTTCACGAGCAGCCTAAGG AGCTGAAGGAGGAGTATTACAGTAGAGATGTTATGAAGAAGGTTAGGATGTTTAGTGGGTACGGGTCGAGGATGAGAGTTGGGAAGTTGTATTGGATGGA TTCGTTGGCTTGTCAAATGCTTGCTCATGAGGGAGCTCTTGATCCTCAAGAGTTCCCTCCCGTTTGCAGGAACACTATATTGAAATTCTCAGAAGACATT CGAGAACTCGGTACGACCTTATCAGAACTGTTCTCAGAAGCGCTAGGGCTCGCACCCGATCACCTGAAGAAAATCAACTCGGTCAACTTGCAAAGAATCG GTTTGAACTATTATCCAGCCTGTCCTGAACCGGAAGTCGCCACAGGTCAAGGCCCGCATTTCGACCCGTTTACTTTCACCGTTCTGCTCCAAGACCGAAC CGGAGGGCTGCAGGTTTTCCACGACGGCGGGGGGGGTGTGGCGCGCCCTGGTTAA
AA sequence Show only first row Show all	>Lus10013314 pacid=23151342 polypeptide=Lus10013314 locus=Lus10013314.g ID=Lus10013314.BGIv1.0 annot-version=v1.0 MASPPASFFSPSDPGSLAAAKEAVTQFDKTKAGVKGLVDTGITKVPILFRLSPKTASLYDTKSYQNDTVTASSPAVIDLKGVAAGGARRAEVVDEIRRRS AGMGVFQVVNHGVAGSEMEEMLSKAREFHEQPKELKEEYYSRDVMKKVRMFSGYGSRMRVGKLYWMDSLACQMLAHEGALDPQEFPPVCRNTILKFSEDI RELGTTLSELFSEALGLAPDHLKKINSVNLQRIGLNYYPACPEPEVATGQGPHFDPFTFTVLLQDRTGGLQVFHDGGGGVARPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	0	1
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	2.8	0.7960
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	3.9	0.8065
					Lus10010248 [exp]	5.5	0.7585
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	6.5	0.8087
					Lus10005511 [exp]	7.3	0.6752
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	7.7	0.7690
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	8.1	0.8209
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	9.4	0.7457
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	12.7	0.7064
AT5G27750			F-box/FBD-like domains contain...		Lus10004848 [exp]	17.0	0.6514

Compare expression of checked genes

Lus10013314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.