Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27300 272 / 6e-89 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT5G22290 268 / 3e-87 NAC FSQ6, FAN, ANAC089 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) AT3G44290 253 / 1e-81 NAC ANAC060 NAC domain containing protein 60 (.1) AT1G65910 175 / 7e-49 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 172 / 8e-49 NAC ANAC086 NAC domain containing protein 86 (.1) AT4G35580 172 / 2e-48 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 170 / 7e-47 NAC ANAC014 NAC 014 (.1.2) AT3G17730 160 / 1e-46 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 165 / 3e-46 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G24590 163 / 9e-46 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005204 [exp] 645 / 0 AT5G22290 292 / 8e-97 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10034183 [exp] 352 / 5e-119 AT5G22290 263 / 5e-85 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10043402 [exp] 344 / 4e-117 AT5G22290 262 / 4e-86 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10042284 [exp] 162 / 7e-47 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 162 / 1e-46 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10020794 [exp] 171 / 2e-46 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10007377 [exp] 169 / 2e-46 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10008285 [exp] 167 / 2e-46 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 167 / 2e-46 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161300 [exp] 327 / 3e-108 AT2G27300 273 / 4e-88 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) Potri.012G007500 [exp] 172 / 8e-48 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.017G139500 [exp] 171 / 4e-47 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 162 / 2e-46 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.011G149300 [exp] 169 / 3e-46 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.015G004100 [exp] 167 / 3e-46 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.003G089800 [exp] 160 / 3e-45 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.004G081000 [exp] 165 / 5e-45 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.010G174600 [exp] 158 / 9e-45 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.001G144400 [exp] 159 / 1e-44 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10013316 pacid=23151411 polypeptide=Lus10013316 locus=Lus10013316.g ID=Lus10013316.BGIv1.0 annot-version=v1.0 ATGGCGACGGTGGCGACAAACAGTGGAGGAGGGGTGTCGAGGAAGACGAAGAAGTCGATAGAGGCGTCGACGATGTTTCCAGGCTTCCGATTCTCTCCGT CCGACGTTGAGCTGATATCCTACTACCTGAAGAAGAAGTTGGACGGCGAGGAGAAGTGCGTTGAGGTCATTCCTCATGTCGACATTTGTAAACACGAGCC CTGGGATTTGCCTGCCAAATCAGTGGTCCAATCAGAGACGGAGTGGTTCTTCTTCTCGTCTCGAGGCAGGAAGTACCCTAATGGATCACAGAGCAAAAGG GCGACGGAGCTCGGCTACTGGAAGGCCACCGGGAAAGAGCGCAGCGTCCGGTCCGGCTCCGCCGTCATCGGAACCAAACGCACCCTCGTCTTCCACATCG GCCGTGCCCCTAAAGGCGAACGCACCGAGTGGATCATGCACGAATTCTGCATGCACTCCGGTTCCAATGATTCATTGGTTGTGTGCCGCCTGAGGAGGAA CGTGGATTTCCGGGGACACCACCCGACCAATGACGCTTCAGAAGGAAACAGAGTCGTTGAGGTAAACGCAGCAGCCGATAGCTCCAAAAAGACAAACAGC AGCACCTCTGATTCCTATTCGATCGAGCAGATTGATTCAGCTTCAAATGACTTCGAGTGCTATCAACAGCCAAACGTGGTCACCCCTCCAGTAGTTGCAG AAACCTCCAACCATTTCCAGCTACTGGATGGATTCACCCAGCCGGATGAGGATTTCTTCGCCGACATTCTCAACGACGACATAATCAAACTAGACGAGAC ATTACTCCCCACCTCTCTGCCTCAAGCTGCGGCTTGTGCAGCCGATGCAGATAGGGTACAGGGTCTGCAGCCATCCTGGATGGCTGCTGCACCTTCGAAC AGGAGAGTAAAGCTGGAGAGTCGTCGGAGGAAGAAGAAAATCGACCAAGTGGCTGCTCCGGTGGAAGGAAAAGACGAGAAGGCAGAGAAGGAGAGGCGGA GCAAGTCGAAGAAGGTGCCAAGTTGTGCTGTTGGGTTGGTGATGTTCGTGAGGAAGAAGCGAGGGAACAGAGTGGCTCTGCTGTTTGTGCTTGTGGTGTT GGCTGTGGTTGGGGTGCTGGCTCTGGTTGGTTCGTTGTACGGAGAGGTTCGGGGGACGGAGAGACTTCGGAGGGTTTTGCATCTGCCCGATTCGTGGTTC AGGTTAGCTCACTGA
AA sequence Show only first row Show all	>Lus10013316 pacid=23151411 polypeptide=Lus10013316 locus=Lus10013316.g ID=Lus10013316.BGIv1.0 annot-version=v1.0 MATVATNSGGGVSRKTKKSIEASTMFPGFRFSPSDVELISYYLKKKLDGEEKCVEVIPHVDICKHEPWDLPAKSVVQSETEWFFFSSRGRKYPNGSQSKR ATELGYWKATGKERSVRSGSAVIGTKRTLVFHIGRAPKGERTEWIMHEFCMHSGSNDSLVVCRLRRNVDFRGHHPTNDASEGNRVVEVNAAADSSKKTNS STSDSYSIEQIDSASNDFECYQQPNVVTPPVVAETSNHFQLLDGFTQPDEDFFADILNDDIIKLDETLLPTSLPQAAACAADADRVQGLQPSWMAAAPSN RRVKLESRRRKKKIDQVAAPVEGKDEKAEKERRSKSKKVPSCAVGLVMFVRKKRGNRVALLFVLVVLAVVGVLALVGSLYGEVRGTERLRRVLHLPDSWF RLAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	0	1
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	4.2	0.8836
AT4G10265			Wound-responsive family protei...		Lus10031613 [exp]	6.5	0.8886
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	8.1	0.8942
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	9.5	0.8604
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	19.4	0.8363
					Lus10031595 [exp]	26.5	0.7917
AT5G62750			unknown protein		Lus10004267 [exp]	27.0	0.8547
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	38.6	0.8424
					Lus10038978 [exp]	43.9	0.8251
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	49.1	0.8613

Compare expression of checked genes

Lus10013316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.