Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36480 723 / 0 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT3G48780 136 / 8e-35 ATSPT1 serine palmitoyltransferase 1 (.1) AT5G23670 135 / 2e-34 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48790 112 / 3e-27 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G04620 81 / 4e-16 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005205 [exp] 882 / 0 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10036011 [exp] 132 / 3e-33 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10016717 [exp] 128 / 5e-32 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10009024 [exp] 69 / 3e-12 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043800 [exp] 758 / 0 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 758 / 0 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.012G104500 [exp] 137 / 4e-35 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 133 / 8e-34 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.001G126700 [exp] 70 / 1e-12 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10013317 pacid=23151381 polypeptide=Lus10013317 locus=Lus10013317.g ID=Lus10013317.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTGGGTTAAGCATAGTGAATAAGGCTGTACACTGGCTAACAGTGGCTTCAGATGCTCCTTCTGCTCGAGCAGTTGTTTTTGGAGTTCATA TTGGCGGTCATCTTTTCGTGGAGGGACTTTTACTATTTGTCATCCTTTTTCTGCTCTCCCAGAAGAGTTACAAGCCTCCTAAACGGCCTCTGACAAAAAA GGAAATAGATGAGTTGTGTGATGAATGGGTTCCAGAGCCTCTTATTCCTACTATTACCGAAGAAATGCAACACGAGCCACCAGTGTTGGAAAGTGCTGCA GGCCCTCATACTGTTATCAACGGGAAAGACGTAGTGAATTTTGCTACTGCTGATTATCTAGGACTAATAGGACATGAGAAATTGCTGGAGTCATGTACTA ATGCAATGGAAAAGTATGGCGTTGGTTCTTGTGGTCCTCGTGGTTTCTATGGAACCATCGATGTCCACCTTGATTGTGAGACCAGAATAGCAAATTTCTT GGGAACGCCAGACTCAATTCTCTATTCGTATGGTCTGTCCACTATGTTTAGCGCAATTCCATGTTTTTGCAAAAAGGGCGACATCATTGTTGTGGATGAG GGTGTCCACTGGGGAATACAAAATGGACTTCATCTGTCCAGAAGCACCATCGTGTATTTCAAGCACAATGACATGAAATCTCTACACAATACATTGGAGA AAATTACTGCAGATAATAAACGTGCTAAGAAGTTGCGGCGTTACATTGTTGTTGAATCTGTATACCAGAATTCTGGTCAAATAGCTCCGCTAGATGAGAT TATCAGACTGAAGGAGAAATACCGGTTCCGTGTTTTGCTGGATGAGAGCAACTCATTTGGAGTGTTGGGGAAGTCTGGAAAAGGTCTTACTGAATATTTC GGGGTCCCGGTTGAAAAGATTGATATCATAACTGCAGCTATGGGTCATGCGTTAGCAACTGAAGGAGGATTCTGCACTGGCAGCGCCAGAGTCATTGATC ACCAGCGATTGAGCAGCTCTGGCTATGTCTTTTCTGCATCATTGCCCCCGTACCTTGCTAGTGCTGCTATCACTGCTATTGATATGATCGAGGACAATCC CGCCCTCATAACAAAGCTGAAAGAAAACATTTCTTTCCTGTTGAAAGGGTTGTCAGGCTTAGAGGGCCTCACAGTGGCGAGCAACCCAGAATCTCCAATC GTTTATCTTAAGCTGGAACATTCCACAGGTTCTAAAGCAGGAGACATCGAACTCCTCGAGAAAATCGCTGATCTCGCTCTGAAGGAAGACTCAGTTTTTA TAGTGACTTCGAAAAGGTCGACACTCGATAAGTGCCCATTGCCGGTCGGAATCAGATTGTTCGTCTCCGCCGGTCATTCGGAGACCGACCTTCGGATGGC GTCGGAATGTCTGAAGAGAGTTTCGGCACTCGTGCTCAAGAACCTGTGA
AA sequence Show only first row Show all	>Lus10013317 pacid=23151381 polypeptide=Lus10013317 locus=Lus10013317.g ID=Lus10013317.BGIv1.0 annot-version=v1.0 MASSGLSIVNKAVHWLTVASDAPSARAVVFGVHIGGHLFVEGLLLFVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPEPLIPTITEEMQHEPPVLESAA GPHTVINGKDVVNFATADYLGLIGHEKLLESCTNAMEKYGVGSCGPRGFYGTIDVHLDCETRIANFLGTPDSILYSYGLSTMFSAIPCFCKKGDIIVVDE GVHWGIQNGLHLSRSTIVYFKHNDMKSLHNTLEKITADNKRAKKLRRYIVVESVYQNSGQIAPLDEIIRLKEKYRFRVLLDESNSFGVLGKSGKGLTEYF GVPVEKIDIITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAIDMIEDNPALITKLKENISFLLKGLSGLEGLTVASNPESPI VYLKLEHSTGSKAGDIELLEKIADLALKEDSVFIVTSKRSTLDKCPLPVGIRLFVSAGHSETDLRMASECLKRVSALVLKNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10013317 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	11.8	0.8865
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	12.0	0.8515
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	14.4	0.8834
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	16.2	0.8609
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	16.9	0.8846
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	28.9	0.8051
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	30.3	0.8639
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	30.7	0.8479
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10032620 [exp]	30.8	0.8779
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	31.2	0.8670

Compare expression of checked genes

Lus10013317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.