Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36026 78 / 2e-17 OFP Ovate family protein (.1) AT3G52525 74 / 3e-16 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36030 65 / 6e-14 unknown protein AT2G18500 67 / 5e-13 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 61 / 5e-11 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G30400 60 / 2e-10 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT1G06920 59 / 5e-10 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 56 / 4e-09 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT5G58360 55 / 8e-09 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G04820 54 / 1e-08 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005206 [exp] 269 / 4e-91 AT3G52525 82 / 2e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10021302 [exp] 85 / 1e-19 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10016978 [exp] 79 / 1e-17 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10041730 [exp] 67 / 1e-12 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10011092 [exp] 66 / 3e-12 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 64 / 1e-11 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10025241 [exp] 62 / 5e-11 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 61 / 1e-10 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 59 / 4e-10 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161700 [exp] 93 / 4e-23 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.004G200500 [exp] 89 / 1e-21 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.006G205400 [exp] 87 / 1e-20 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.016G072800 [exp] 85 / 6e-20 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.007G028000 [exp] 68 / 4e-13 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 66 / 3e-12 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.018G080100 [exp] 65 / 5e-12 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.005G125200 [exp] 65 / 6e-12 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.006G156176 [exp] 64 / 9e-12 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.004G062100 [exp] 64 / 2e-11 AT4G18830 104 / 9e-25 ovate family protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10013318 pacid=23151337 polypeptide=Lus10013318 locus=Lus10013318.g ID=Lus10013318.BGIv1.0 annot-version=v1.0 ATGAAACCAAACGATCATCTCAACAACGATGCAAACTCAAACAGTACTACTGATTGCACCAAGAAGAAGACGAAGATCAAGAATCTCTTCATCATCGGCC GCCTCGCCGTGTTCCGATCCTCCTCCTCCTCCTCGAATTCCGTCTGCGGCTGTGGCCTCTCCGACGTCCACGATCCTTCATTGCCGCCGCTAACATCCTC CACGATACCTCCGTCGCCGGCCTCCAGCATCAACATCCTCGCCACACTTCGTAAACACCCCAACTCCCCTGCCGCCAGCACAATTCCCGATTACGCCGAT GACGAAGATGAAGAAGAAACAGGTTATAATCGGCGAGATCTACGCACCGATTCATCTTACACCACAAGTATAACCGCCACGACAACGACAACAGCAACGG CTTGTTCCTCCTCATACTCGTCTGCTTCTTCTTCTCGTAACGGATCTGATCGAAAACGGTCGACGTGGCGATCGGGATCTGTGATCGGGAGCAGTATCGC GGTGGTGAAGGATTCAGAAGATCCCTACGGCGATTTCAGGGATTCGATGATGCGGATGGTGGAGGAGAAGGGGATTTACAGTCGGAGCGGACTTGAAGAG CTTCTCAAGCGGTTCTTGGAGCTCAATTCTCCCTGTTACCATTCCGTCATCGTCAGAGCCTTCACTCAGATCTGGAACCAAGTCGTCGTCGCCGCCGCTT CGATCGACAGCGATCACGTCAGTCGTCAAGCCGCATACGGACGCCGTTGA
AA sequence Show only first row Show all	>Lus10013318 pacid=23151337 polypeptide=Lus10013318 locus=Lus10013318.g ID=Lus10013318.BGIv1.0 annot-version=v1.0 MKPNDHLNNDANSNSTTDCTKKKTKIKNLFIIGRLAVFRSSSSSSNSVCGCGLSDVHDPSLPPLTSSTIPPSPASSINILATLRKHPNSPAASTIPDYAD DEDEEETGYNRRDLRTDSSYTTSITATTTTTATACSSSYSSASSSRNGSDRKRSTWRSGSVIGSSIAVVKDSEDPYGDFRDSMMRMVEEKGIYSRSGLEE LLKRFLELNSPCYHSVIVRAFTQIWNQVVVAAASIDSDHVSRQAAYGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10013318 [exp]	0	1
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	3.0	0.8584
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	6.9	0.8623
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	8.5	0.8694
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	17.2	0.8739
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	19.7	0.8655
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	23.6	0.8232
					Lus10034772 [exp]	23.9	0.8559
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	26.4	0.8591
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	28.6	0.8099
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	30.3	0.8293

Compare expression of checked genes

Lus10013318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.