Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 744 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 460 / 6e-156 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 452 / 9e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 447 / 2e-150 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 446 / 5e-150 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 440 / 2e-147 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 439 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 437 / 4e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 437 / 1e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 439 / 6e-146 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005207 [exp] 1171 / 0 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 469 / 5e-159 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 443 / 9e-149 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 449 / 2e-148 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004544 [exp] 438 / 3e-148 AT4G21065 461 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014298 [exp] 441 / 5e-148 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 440 / 7e-147 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 444 / 3e-146 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 434 / 2e-145 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 821 / 0 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 507 / 2e-174 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 495 / 3e-169 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 493 / 2e-168 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 474 / 5e-163 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G086200 [exp] 459 / 8e-154 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 454 / 2e-153 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 453 / 3e-153 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 456 / 2e-152 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G092400 [exp] 448 / 4e-151 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013319 pacid=23151412 polypeptide=Lus10013319 locus=Lus10013319.g ID=Lus10013319.BGIv1.0 annot-version=v1.0 ATGGAGAGACACCTCATTTCTCCGCGAGACTCGCCGACTAGGATTGTGCGGCACTGCATCGCGCTGCTGGAGACTTCCGCCACTTCACACCTCAACCTCA AACAGATACACGCATTCTCCATCAGGTATGGTGTCCCGCTATCCGAATCTCATCTCGGAAAATGTCTCATATACACAGCCGTCAATCTCTCAATCCCCAT GGCCTACCCTCACCGAATCTTCTCCCAGCTGAAATCCCCCAACACTTTTACATGGAACGCAATGATCAGAGGCTACGCCGAGAGCTCAAACCCCAAACCG GCTATCGAACTCTACACCTCAATGCACTCCAATTCCATAGAGCCCGACACGCACACTTTCCCTTTTGCTTTAAAGGCCGTGGCCAAATCCGTCAGCATTC GAGTAGGCGAAGGGATTCATTCACTTTCCGTTAAAAACGGGTTTGAATCTCTGGTGTTTGTTCAGAACAGTCTGGTTCATATGTACTCTTTGTGTGGACA CCACCAGAGTGCGCTCAAAGTGTTTGAGGAAATGCCTCAAAGGGATGTGGTGACTTGGAATTCCGTCATCAATGGATTTTCACTTAACGGGATACCCGGG GAAGCTCTAACACTTTATCAGAAGATGACGCAATCCGAAGGTGTGAAGCCGGATGGGTTCACTATGGTTAGCTTATTCTCTGCTTGTTCGAAGTTCGGTG CATTGGCGTTGGGACGGAGAGCTCATGTGTATATGGTGAAAGTCGGCTTGAACGAGAATTTACACGCGATTAACGCTCTTTTGGATTTCTATGCGAAATG TGGCGGAACTAAAGAAGCTGAGAGAGTATTCGACGAGATTTCGGGGAGAAATGTGGTATCTTGGACTTCGTTGATTGTCGGTTTGGCTGTTAACGGGTAT GGAAATGAAGCATTGAAGTATTTTAAGCAGATGGAGGAAGAGGGTTATGTGCCGAGCGAAATAACTTTCGTCGGAGTGCTCTATGCTTGTAGCCATTGTG GAATGGTTGATGACGGGTTTCGATACTTTGAGAGAATGAAGGATCAGTATCGGATTCTGCCTCAAATCGAACACTATGGTTGTATGGTGGATATGTTGGC GAGAGCCGGCAAGGTGAAGCAAGCGTATGATTATATTCAGGAGATGCCGATGAAGGCTAATTCCGTCATTTGGAGAACTTTACTATTTGCTTGCACTAAG TATGGTGATGTGGAATTGGCTGAGGTTTCGAGAGGCCGACTCTTGGAGTTGGATCCTGAACATAGCGGAGACTATGTGCTTATCTCGAACCTCTATGCTT CGAAAAAGCGATGGGATGATGCACAGGAGGTTAGAGAGTCAATGGTTGACCAAGGAGTGGCGAAAATTCGAGGGAGTAGTTTGGTGGAGCTGGGGAACCG AGTTTACGAGTTTCATACGGGGAGTAGAGTCCATTGGCAAAGCGAGGAGATTTACGAGATGTTGGGAGAGATTACAAAGAGGTTGAGGTTAAAAGGGTAT GTGCCAGGCACGAGTCATGTTTATGCGGATATAGAAGAGGAAGAGAAGGAGAATAGTCTGGTTTATCATAGTGAGAAGATTGCGATTGCGTTTATGCTGT TTAATTCTCCTGCTGAAACGACCATCAGGGTGTTTAATAACTTGAGAGTTTGTGGTGATTGTCATGTGGCGATCAAGCTCATTACGGAGGTTTTTGGTAG GGAGATTGTTGTAAGAGATTGCAGTCGGTTTCATCATTTTAGAGAGGGTGAATGTTCTTGTGGAGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10013319 pacid=23151412 polypeptide=Lus10013319 locus=Lus10013319.g ID=Lus10013319.BGIv1.0 annot-version=v1.0 MERHLISPRDSPTRIVRHCIALLETSATSHLNLKQIHAFSIRYGVPLSESHLGKCLIYTAVNLSIPMAYPHRIFSQLKSPNTFTWNAMIRGYAESSNPKP AIELYTSMHSNSIEPDTHTFPFALKAVAKSVSIRVGEGIHSLSVKNGFESLVFVQNSLVHMYSLCGHHQSALKVFEEMPQRDVVTWNSVINGFSLNGIPG EALTLYQKMTQSEGVKPDGFTMVSLFSACSKFGALALGRRAHVYMVKVGLNENLHAINALLDFYAKCGGTKEAERVFDEISGRNVVSWTSLIVGLAVNGY GNEALKYFKQMEEEGYVPSEITFVGVLYACSHCGMVDDGFRYFERMKDQYRILPQIEHYGCMVDMLARAGKVKQAYDYIQEMPMKANSVIWRTLLFACTK YGDVELAEVSRGRLLELDPEHSGDYVLISNLYASKKRWDDAQEVRESMVDQGVAKIRGSSLVELGNRVYEFHTGSRVHWQSEEIYEMLGEITKRLRLKGY VPGTSHVYADIEEEEKENSLVYHSEKIAIAFMLFNSPAETTIRVFNNLRVCGDCHVAIKLITEVFGREIVVRDCSRFHHFREGECSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	1.4	0.8540
					Lus10029579 [exp]	2.8	0.8441
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	4.0	0.8114
AT4G15820			unknown protein		Lus10034169 [exp]	6.3	0.7882
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	10.4	0.8115
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	11.4	0.7994
AT1G27070			5'-AMP-activated protein kinas...		Lus10013279 [exp]	14.2	0.7592
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	14.5	0.8025
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	18.5	0.8040
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	19.2	0.8050

Compare expression of checked genes

Lus10013319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.