Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36010 311 / 8e-102 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 300 / 2e-97 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 159 / 2e-44 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005209 [exp] 452 / 1e-158 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10016972 [exp] 331 / 1e-109 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 328 / 8e-108 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 318 / 1e-104 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 318 / 5e-104 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10033151 [exp] 154 / 3e-42 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G200800 [exp] 444 / 1e-153 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 426 / 8e-147 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 346 / 1e-115 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 323 / 7e-107 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.002G023400 [exp] 157 / 4e-43 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013321 pacid=23151351 polypeptide=Lus10013321 locus=Lus10013321.g ID=Lus10013321.BGIv1.0 annot-version=v1.0 ATGGAGCCGAATTCCCAGCCGCCTACTGGACCGACGCAGCCTTCTCCTCCTCCGCCGACCCAGCTGCAGATCGACGCCGCCAGTTCGCCGTCCTCCACTG CTTTGAAGCGTCAGTTGTTCTTATCGTCTGTGAAGCCGCCGTTCTCGCCTACTGGAGACTATCACCGCTTCGGCCCCGATCCTCGCCGCGCCGCCGATCA GGAGCCCGAGGGAATCGTAGTGAGAACTCCTCCATTAAAGCGGAAGAGTGATGCACCAGAACATGGAGTGGAGTCTAGTGGGTGGAATACTAGTTCAGCA CACACTGATGTTGTGAACACCCCCATACAGACTCCAGTCTCAGTGAAAGGGGGGAAAGCTCCTAAGGCCTCCAGGCTTTCGAGGAGCAAAAAATCAGCCT CGAAGAATGCCAATGCAAATATCAGTTCTCCTGGCAATAATCTTACTCCAACTGGTCCTTGTCGCTATGACAGCTCTCTAGGTCTCTTGACAAAGAAATT CATCAATTTGATCAAACAAGCTGAAGACGGTATGCTTGATCTCAATAAAGCTGCTGACACTTTAGAGGCAGAAGTTGAAAATCTTGCAATTGAGGAACGT AGATTGGATGAACGGATAAGACATTTCGGAGCGCTAAAATCTTATGGCAGGGATATGCAAGAGAGGCTGAGAGACCTTAGTGAGGACGAGAACAATCAAA AGTGGCTTTTTGTCACTGAGGACGACATCAAGAACATACCTTGTTTCCAGAATGAAACACTTATAGCTATCAAAGCTCCACATGGAACTACATTGGAGGT TCCTGATCCTGAGGAGGCTGCTGACTACCCACAAAGGCGTTACAAGATCGTGCTGCGAAGCACGATGGGTCCTATAGACGTCTATCTTGTCAGCCAATTC GAAGAGAAATTCGAGGAGATCCATGGAGTCGAACCACCACCTCCTCCTAGCTATCCTTCTAGCTCCAGCCTTAACGAGAATCATGCAACCGCATCGGTTG CAATAGAGAATAGAGGAAAGGACATCGAAAATGCAGAGCAAGATCTTAATCCTCCACAGGATTATTTCAGCGGGATCATGAAGATTGTTCCTACTGACGT CGATAGTGCTGCAGATTACTGGCTTTTATCAGACGCCGGTGTTAGCATCACGGATATGTGGGGAACCGATCCTGGGTTCGAATGGGACGAGTTCGGCACA CTCCATGACGACTATGCCATGGAAAATGTCAGCATACCGCAGCCACAAACTCCACCGCCGAATCCAACAGAACCACCTTCTGCTGCAAACACTACTCCAC AGTGA
AA sequence Show only first row Show all	>Lus10013321 pacid=23151351 polypeptide=Lus10013321 locus=Lus10013321.g ID=Lus10013321.BGIv1.0 annot-version=v1.0 MEPNSQPPTGPTQPSPPPPTQLQIDAASSPSSTALKRQLFLSSVKPPFSPTGDYHRFGPDPRRAADQEPEGIVVRTPPLKRKSDAPEHGVESSGWNTSSA HTDVVNTPIQTPVSVKGGKAPKASRLSRSKKSASKNANANISSPGNNLTPTGPCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAADTLEAEVENLAIEER RLDERIRHFGALKSYGRDMQERLRDLSEDENNQKWLFVTEDDIKNIPCFQNETLIAIKAPHGTTLEVPDPEEAADYPQRRYKIVLRSTMGPIDVYLVSQF EEKFEEIHGVEPPPPPSYPSSSSLNENHATASVAIENRGKDIENAEQDLNPPQDYFSGIMKIVPTDVDSAADYWLLSDAGVSITDMWGTDPGFEWDEFGT LHDDYAMENVSIPQPQTPPPNPTEPPSAANTTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	0	1
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	2.8	0.8509
AT4G08630			unknown protein		Lus10001720 [exp]	3.2	0.8549
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10003957 [exp]	4.2	0.8489
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	4.7	0.8477
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10001317 [exp]	5.0	0.8165
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	5.6	0.8615
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	6.9	0.8324
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	8.3	0.8575
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	8.9	0.8067
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	9.5	0.8117

Compare expression of checked genes

Lus10013321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.