Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 1004 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 914 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 904 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G53550 710 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT3G27020 703 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G24380 696 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 682 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT4G24120 664 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G45450 288 / 5e-93 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043408 [exp] 1132 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 1129 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 773 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 770 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 709 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 707 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 701 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10012549 [exp] 691 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 690 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G069200 [exp] 956 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 954 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 949 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 946 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 926 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 785 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 703 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 687 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 666 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 640 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10013323 pacid=23151386 polypeptide=Lus10013323 locus=Lus10013323.g ID=Lus10013323.BGIv1.0 annot-version=v1.0 ATGGCCATCGAGAAGAATTCCGACGAAAACGGAGGCCGTCGTGAAGACGACGACCATCACTACTACCCGGACGAAACGACGGAGGATCAAGACGGTGCCA ATAACAAGGTGCGGAAGAGGATGGCCGGGAAAACGGTGTCATCGTCGTCGTCGTTTGAATTGGAGCAGGAATCAGTGGAGAAGATCTTCGAGGCGAAGGA GGTTCCGCCGTGGCAGCAACAGCTGACGGTGAGGGCGTTCGTTGTCAGCTTCGTTTTAGGTGTTCTGTTCACCTTCATTGTGATGAAGCTCAACCTCACC ACCGGTATAATCCCGTCGCTCAACGTCTCCGCTGGATTGCTAGGGTTTTTCTTCGTCAAGACCTGGACTAAGATGCTCCAGAAGTCTGGAATGCTCAAAC AGCCTTTCACTCGCCAGGAGAACACCGTCATTCAGACCTGCGTCGTCGCCACCTCCGGCATCGCCTTCAGCGGTGGTTTTGGAAGTTACCTATTTGGAAT GAGTGAAGTTGTGGCCAAACAATCAACGGAAGCTAACAATGCTCAGAACATCAAAGACCCGTCACTGGGATGGATGATTAGCTTCCTTTTTGTTGTCAGC TTTCTTGGCCTATTCTCTGTAGTTCCTCTACGGAAGATTATGGTCATAGACTTCAAATTGACATATCCAAGTGGCACTGCTACTGCTCATCTCATCAACA GTTTCCACACTCCTCAGGGTGCCAAGCTAGCAAAGAAGCAAGTGAGAGCATTGGGGAAGTTCTTCTCCTTCAGCTTCTTGTGGGGCTTCTTCCAATGGTT CTTCACTGCTGGTGATGGCTGTGGATTTGTCAACTTTCCTACTTTTGGCCTCCAGGCCTATGAGCACAAGTTCTTCTTTGATTTCTCTGCTACATATGTT GGTGTGGGAATGATCTGCCCATATCTAGTCAACATCTCTTTGCTACTTGGAGCAGTTCTATCCTGGGGTGTAATGTGGCCTCTGATAAATAATCAGAGAG GTAACTGGTATTCAGCGGAACTACCCCAAAGCAGTCTTTCTGGCCTGCAAGGTTACAAGATCTTCATTGCTATAGCCATGATCCTTGGCGACGGAGTCTA CAATTTCCTCAAGGTATTCGGCAAAACTGTACAAGGACTGCACAAACAGTTCTCTCATAAAGAACCAGGCACCGTCCTACCACTAGCATCCAGCAACTCA ACAACCCCAACAACCATCCCTGCACCACAGTCCTACGACGAGCAAAGACGAACCGAGCTCTTCCTCAGGGACGAAATACCGCTCTGGATCGCCATCAGCG GCTACGTAGCAATAGCAGTCGTGTCAGCCGTACTCGTCCCCCACATCTTCCCCCAGCTGAAATGGTACCACATTGTGGTCATCTACATCATAGCACCAGT GCTAGCCTTCTGCAACGCTTACGGCTGCGGACTGACAGACTGGTCCTTGGCATCCACCTACGGGAAGCTAGCAATCTTCACCATCGGGGCATGGGTGGGA GCCTCACAAGGAGGGGTCCTAGCCGGCCTAGCAGCTTGCGGTGTCATGATGAACATCGTCTCCACAGCATCCGACCTCATGCAGGACTTCAAGACGGGCT ACATGACGCTAGCTTCACCACGATCGATGTTCATCAGCCAAGTGATCGGAACAGCAATGGGATGCGTGATAGCCCCCAGCGTCTTCTGGCTATTCTACAA GGCCTTCCACGACCTTGGAGTACCGGGTTCCGAGTATCCAGCACCATACGCACTTGTCTACCGCAACATGTCCATCTTAGGAGTAGAAGGCTTCTCGGCC CTGCCAAAGCACTGCCTGATGCTCTGCTGCGTATTCTTCTTCGCCGCCATGGCAGTCAACGGGATTCGAGACCTCGTCGGGCCCAAGTGGGCAAAGTACA TACCGCTTCCGATGGCGATGGCCATCCCTTTCTACCTCGGCGGGTACTTTGCGATCGACATGTGCGTCGGGAGCTTGATTCTCTTCGTGTGGGGGAAAGT GAACAAGGAGAAGGCAGATGCGTTTGGACCCGCTGTGGCTTCCGGGTTGATATGTGGAGATGGGATTTGGACTTTGCCTAGCTCGATACTTGCATTGTCT GGTGTGAATCCGCCGATTTGTATGAAGTTCTTGTCCAGGAAGAGTAACACAAAGGTTGATGCTTTCTTGGGATCTTGA
AA sequence Show only first row Show all	>Lus10013323 pacid=23151386 polypeptide=Lus10013323 locus=Lus10013323.g ID=Lus10013323.BGIv1.0 annot-version=v1.0 MAIEKNSDENGGRREDDDHHYYPDETTEDQDGANNKVRKRMAGKTVSSSSSFELEQESVEKIFEAKEVPPWQQQLTVRAFVVSFVLGVLFTFIVMKLNLT TGIIPSLNVSAGLLGFFFVKTWTKMLQKSGMLKQPFTRQENTVIQTCVVATSGIAFSGGFGSYLFGMSEVVAKQSTEANNAQNIKDPSLGWMISFLFVVS FLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTAGDGCGFVNFPTFGLQAYEHKFFFDFSATYV GVGMICPYLVNISLLLGAVLSWGVMWPLINNQRGNWYSAELPQSSLSGLQGYKIFIAIAMILGDGVYNFLKVFGKTVQGLHKQFSHKEPGTVLPLASSNS TTPTTIPAPQSYDEQRRTELFLRDEIPLWIAISGYVAIAVVSAVLVPHIFPQLKWYHIVVIYIIAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWVG ASQGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFISQVIGTAMGCVIAPSVFWLFYKAFHDLGVPGSEYPAPYALVYRNMSILGVEGFSA LPKHCLMLCCVFFFAAMAVNGIRDLVGPKWAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWGKVNKEKADAFGPAVASGLICGDGIWTLPSSILALS GVNPPICMKFLSRKSNTKVDAFLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10013323 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	9.3	0.7682
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	11.5	0.7671
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	15.8	0.7557
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	16.0	0.7521
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	20.8	0.6969
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	21.1	0.7501
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	23.5	0.7433
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	23.8	0.7390
					Lus10002735 [exp]	25.3	0.6956
AT1G19900			glyoxal oxidase-related protei...		Lus10012387 [exp]	27.4	0.7278

Compare expression of checked genes

Lus10013323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.