Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 176 / 4e-53 Eukaryotic aspartyl protease family protein (.1) AT2G42980 100 / 2e-24 Eukaryotic aspartyl protease family protein (.1) AT5G45120 94 / 3e-22 Eukaryotic aspartyl protease family protein (.1) AT3G59080 92 / 1e-21 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 90 / 5e-21 Eukaryotic aspartyl protease family protein (.1) AT3G25700 78 / 8e-17 Eukaryotic aspartyl protease family protein (.1.2) AT4G16563 77 / 1e-16 Eukaryotic aspartyl protease family protein (.1) AT1G25510 75 / 8e-16 Eukaryotic aspartyl protease family protein (.1) AT3G54400 73 / 3e-15 Eukaryotic aspartyl protease family protein (.1) AT5G07030 71 / 3e-14 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005211 [exp] 374 / 6e-134 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 172 / 2e-51 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 169 / 2e-50 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 152 / 5e-44 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 104 / 5e-26 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020759 [exp] 99 / 3e-25 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10028941 [exp] 99 / 7e-24 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 97 / 1e-23 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 94 / 2e-22 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162400 [exp] 209 / 1e-65 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 178 / 6e-54 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 155 / 3e-45 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 97 / 2e-23 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 92 / 6e-22 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 92 / 1e-21 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 91 / 2e-21 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 90 / 6e-21 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 90 / 8e-21 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G158600 [exp] 89 / 1e-20 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10013324 pacid=23151350 polypeptide=Lus10013324 locus=Lus10013324.g ID=Lus10013324.BGIv1.0 annot-version=v1.0 ATGATTTTAAATTACACTCCGTTTGTTAAGAATCCGGTTAATGTGAAAGGTAAGCCGGATTATTCGGTCTATTACTACGTCGGCCTGCGGCAAATAAGCG TAGGAGGCCGGCTCGTGGACATACCGTACAGGTACCTAGCACCTCCTAACAATACCGGAAGCGGAGGGACGATCGTCGATTCGGGGACGACGTTTACGTA CATGACGCGCGGGGTGTTCGATCCGGTGAGCAGCGAGTTGGTAGCTCAGATGGAAAGGAATCAGAACTACAGCAGATCACGCGCCGCTGAGGCCACGAGT GGGCTATGGCCGTGTTTCCGGATTCGCGGTGGAAGGAAGACAGGGTTGGTGTCAGCCTTTCCGGAGCTGAGGTTCCACTTCAAGGGCGGCGCCGACATGG TGTTTCCAATGGAGAATTACTTCGCTTACGTCGGTTCCGTGGGGGGTTCGGCGGCGTGTTTGGCGGTGGTGACGGACGGAGTGGAAGGGAAAGGAGGAAG TGGGCCGAGCGTGATAATAGGGAATTACCAGATGCAGAATTTCCACGTGGAGTTTGATTTGAAGAAGCAGAGATTTGGATTCAAGCAGGAAGCTTGCATC CAGTGA
AA sequence Show only first row Show all	>Lus10013324 pacid=23151350 polypeptide=Lus10013324 locus=Lus10013324.g ID=Lus10013324.BGIv1.0 annot-version=v1.0 MILNYTPFVKNPVNVKGKPDYSVYYYVGLRQISVGGRLVDIPYRYLAPPNNTGSGGTIVDSGTTFTYMTRGVFDPVSSELVAQMERNQNYSRSRAAEATS GLWPCFRIRGGRKTGLVSAFPELRFHFKGGADMVFPMENYFAYVGSVGGSAACLAVVTDGVEGKGGSGPSVIIGNYQMQNFHVEFDLKKQRFGFKQEACI Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	1.4	0.8768
AT5G52360		ADF10	actin depolymerizing factor 10...		Lus10027474 [exp]	5.3	0.8011
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	5.7	0.8303
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	5.8	0.8518
AT1G06475			unknown protein		Lus10020752 [exp]	6.3	0.8279
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	8.9	0.8281
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	13.5	0.8189
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	17.0	0.8130
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	19.1	0.8104
AT2G18910			hydroxyproline-rich glycoprote...		Lus10006958 [exp]	20.5	0.7999

Compare expression of checked genes

Lus10013324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.