Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 150 / 3e-42 Eukaryotic aspartyl protease family protein (.1) AT5G45120 80 / 8e-17 Eukaryotic aspartyl protease family protein (.1) AT1G79720 55 / 2e-08 Eukaryotic aspartyl protease family protein (.1) AT3G25700 52 / 1e-07 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 52 / 1e-07 Eukaryotic aspartyl protease family protein (.1) AT1G01300 51 / 4e-07 Eukaryotic aspartyl protease family protein (.1) AT5G43100 50 / 1e-06 Eukaryotic aspartyl protease family protein (.1) AT5G33340 49 / 1e-06 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 48 / 4e-06 Eukaryotic aspartyl protease family protein (.1) AT3G20015 46 / 1e-05 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005212 [exp] 330 / 1e-114 AT3G52500 145 / 2e-40 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 152 / 8e-44 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 147 / 3e-41 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 140 / 1e-38 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 139 / 5e-38 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 70 / 2e-13 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 59 / 1e-09 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 59 / 1e-09 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10041151 [exp] 58 / 2e-09 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162400 [exp] 175 / 1e-51 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 164 / 1e-47 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 152 / 6e-43 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 78 / 4e-16 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 69 / 4e-13 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 60 / 5e-10 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 59 / 1e-09 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 58 / 2e-09 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 57 / 6e-09 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 56 / 1e-08 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10013325 pacid=23151364 polypeptide=Lus10013325 locus=Lus10013325.g ID=Lus10013325.BGIv1.0 annot-version=v1.0 ATGGCGAATTCCTTCATCTTTTTCTTCCTCCTCTGCTTCTTCACTCTCACTTCATCTTCCCAAATCTCCTTCCACCTCCACCACCGCCACCAACCAAATC TCCACCACCTCAATCTCCTAGCAAACGCATCCCTCTCCAGATCCCGCCACATCAAACACTCCTCTTCCTCTAACTTCGCCGTCAAAACTCAGCTCACCCC ACACAGCTACGGCGGATACTCAATCTCTCTTTCCTTTGGCACTCCGCCGCAGACCTTGCCGTTCTACGGCGGATACTCAATCTCTCTTTCATTCGGCACT CCGCCGCAGACATTACCTTTTGTCGTCGACACTTCCAGCAGCTTCGTCTGGTCTCCTTGCACCACTCACTACCGCTGCAAGAACTGCTCTTTCCCTTCTC CGACCACCGACATTCCGTCTTTTCTTCCGGTCCTCTCTTCGTCGTCGAAGATCGTCGGGTGTAGGAACCCTAAATGCTCATGGATCCACGGCCGATTCGA CCCCTGCGGTGGCGATTGCGGCTACCGGAACGATCCCCGTCGCTACTGCTCCCAGATCTGCCCGCCGTATCTCGTCTCCTACGGCTCCGGCACCGCCACC GGAGGAATCGCCCTCTCCGAAACTCTGCGGCTGCGAAACATCACCGTTTCGAATTTCCTCATCGGATGCTCTGTTTTCTCTTCGAAACAGCCCGCCGGGA TCGCCGGACTGGGTATGCTCTGTTTTCTCTGCGAAACAGCCCGCCGGGATCGCCGGACTGGGTCGGGGGAGGTCGTCGCTGGCAAGTCAACTCGGGGTCA CGAAATTCTCCTACTGCTTGCTGTCTCATAA
AA sequence Show only first row Show all	>Lus10013325 pacid=23151364 polypeptide=Lus10013325 locus=Lus10013325.g ID=Lus10013325.BGIv1.0 annot-version=v1.0 MANSFIFFFLLCFFTLTSSSQISFHLHHRHQPNLHHLNLLANASLSRSRHIKHSSSSNFAVKTQLTPHSYGGYSISLSFGTPPQTLPFYGGYSISLSFGT PPQTLPFVVDTSSSFVWSPCTTHYRCKNCSFPSPTTDIPSFLPVLSSSSKIVGCRNPKCSWIHGRFDPCGGDCGYRNDPRRYCSQICPPYLVSYGSGTAT GGIALSETLRLRNITVSNFLIGCSVFSSKQPAGIAGLGMLCFLCETARRDRRTGSGEVVAGKSTRGHEILLLLAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	0	1
AT2G36570			Leucine-rich repeat protein ki...		Lus10021131 [exp]	1.4	0.8865
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	1.4	0.8768
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	8.9	0.8147
					Lus10034878 [exp]	9.9	0.8080
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	12.4	0.8407
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	13.0	0.8351
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10026911 [exp]	18.0	0.7592
AT1G06475			unknown protein		Lus10020752 [exp]	19.5	0.7971
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	28.4	0.8097
AT2G18910			hydroxyproline-rich glycoprote...		Lus10025469 [exp]	29.7	0.7626

Compare expression of checked genes

Lus10013325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.