Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 607 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 600 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G75660 420 / 4e-131 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013328 [exp] 861 / 0 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 588 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 570 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10000941 [exp] 506 / 5e-166 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 455 / 6e-145 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10012434 [exp] 440 / 6e-138 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10005213 [exp] 357 / 2e-115 AT1G75660 220 / 2e-64 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 358 / 3e-108 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 300 / 6e-87 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 586 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 573 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 560 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 429 / 7e-134 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 374 / 3e-114 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Lus10013326 pacid=23151409 polypeptide=Lus10013326 locus=Lus10013326.g ID=Lus10013326.BGIv1.0 annot-version=v1.0 ATGGGAGTCCCTTCGTTTTACAGATGGCTAGTAAGAAAGTACCCAAACATCGTCGTCAAAGCCCGGCTTCAGCAAGAACAAGACTCTGGTCCAAACTACT CTGTTCCAAATGGGTTTGATCAGCAGTTCGACAATCTTTACCTGGACATGAACAACATCATCCACCCTTGCTTCCACCCTGAGGATCCCTCCCAACCTTT CCCTCCAACAACGTTTGGCCAAGTCCACGCTGCTATGTTTGAATATATTGATCATATATTCAGCATAGTTAGGCCAAGGAAGCTGCTGTACTTGGCCATA GATGGAGTTGGCCCGCGTGCTAAGATGAACCAGCAGCGAGCTAGGCGGTTCCGGTCTGCTAAGGATAAGGATGCTATGGAACAAGAGGAGGATGTTTTGA GAAAGCAATTTGAGATTGAAGGCAAGAAGCTCCTTCCGAAGCTGGAGACCGAAGTTTCCGATTCGAACATCATAACTCCAGGGACAGAGTTCATGTTCCA GCTCTCGAAGAAGCTCGAACAATATGTAACACTTAAGATGGAGACTTGTCCCGGATGGAAGGACATTAAGGTTGTACTTTCGGATGCGAATGTTCCTGGC GAAGGTGAACATAAGATCATGTCCTTCATTCGTCACCAGCGTTCCCTTCCTGGATATAATCCGAATACTCGACATTGCATCTATGGCCTTGATGCTGACT TGATCCTGCTGGCCTTGGCAACTCACGAAGTACACTTCTCGATATTACGAGAGGATGTCACTGTGAAAGAGGAACAACCAATTTGTTTATCTTCTTTGAA AACCAGCCTTTCGACTCTTGAATCGAAATCGAGAGGGTGGTTTGGAGGACAGAAACCAAAAATCCAAAAGGCATCTTTCATCAGAAAGCCATATCAGTTC CTGCAAATCTGGACTTTGAGGGACTACTTAGAGATTGACATGAACATCCCTGATCCTCCCGAGAAGTTCACCTTCGATCTAGAGCGTGCCATCGATGATT TCGTATTCATCTGCTCGTTTGCTGGAAATGATTTTCTCCCCCACATGCCTACGCTTGAAATTCATGAGGGTGCTCTTGATCTGCTGATGAATGTTTATAA GGAACATTTCAAAAGCCTTGGTGGCTACTTAGTAGATATGCAAAGGATTCAGGATCCGAATACTGGGTTCATCAAGTTGAAAAGAGTCGAGAAGTTCATC CTCGAGGTTGGGAAATTCGAGGATAGAATTTTCAAGAAAAGATCCGAACTCAAAGATCTAATGCTTGAAAAGATCGCTGCAACTTTGTTAGCTCCTGATA ATGAAGATGAGGTTTTGGATTTAAGTTCCACTTCCAATGAAAGTTCTCTGACAGCAGAAGATCAAGTGAAGCTTGGGAGTGATGGCTGGAGGAAAAGATA CTACGAGGAGAAATTCTCATCAGAAACAACAACGAAAGTCGTGGTCCAAAAGTATACGGAAGGGTTGTTGTGGGTTCTACAATACTACTACTCAGGAGTC CCTTCATGGAAATGGTACTATCCGTATCATCATGGACCATTCGCGTCCGATCTAAAGGGCCTTGCACAAGTGAAAGTGAAGTTCCAAAGGGGTTCTCCTT TCAAACCATTTGAACAGCTCATGGCTGTACTACCACCTCAAAGTGGCCATGCACTTCCCAAGCCGTATCAGAAACTCATGACGGATTCCAAGTCGAATAT CATTGACTTCTACCCCACCGATTTCATAATCGACATGCATGGAAAACGATTTTCACATCAGGGAATATGCAAGCTTCCTTTTGTTGACGAACAACTGCTT CTGGATGAGGTAGACAAGGTTGAGAAGGAACTCAAAGCTCATGAAAGTGAGAGAAACAAACAGAATACTGAGAGGCTCTACATGAGAACAAGCAGCTTTC CAGATGATCAGCTAGTCTTACTTTTCTCATCCCCAAGTGAAAAGAAACTTGATATTACTCTATGTGGAATCGGTGGACTTGTACGATACGACTCTGAAGA CCTCGACATAGCAGGTCTGGATTTCCAAGAGCTGAAGAACAGTATTACGGCCAAAAAAATATTATGTGTTTTCTTCAAGTTGCCTTCGGGAACAAGTCAC AATATTCCTCGTCCTCTGGAAGGAACATCATTTCCAGATAAGGTGCGAGTATTTTCCTCCGAAAAACGGTGTGAAGGATTCGAAACTTTATTGATGGTTG TTTGTTACGTTTACTGGATAATGCAGACCATAACTGAAGCAGACATTGATGTAATTCAACTATGGCATGAGATCCCCATTCGCAAATACACAAACAGCAA TTGGCAGAGAAGCAACTGGAGCAGAAATCCAGGAGAACATCAACAACAATATAATTACAACAATTATGCGATGGACTCAAACTCAAACTCGTTCAGGAGT AATCACGTTCCTGCAAAGAGATTCACAGCTTCTCCAAGTGTAAACATCAATCTTTCAGGACCGGCTGGTTCAGGTTTCAGCATGTGCAGAGGAAGAGGGA ATAATGTTAATCCTCCTCATCCTGCTCCAGCAGTATCCTCCAGTGTTCGAGCCACCACGTGTTTAAAATATTCTGGATACTACAACAGATACAACAACAA CAACAAAAATGTATGGAGACAGCCATTGCAATCCGATAATGCGAAATCAGATGATGCTGCAAAGTCTCATGGGCAATGGAGAAGCAGCAGCAGCTCGAGT GGTAATTACCAATCTGTTCATGGGTACGGAAGAGGTAATAATTATGTGAATGGTCCACAGGGTTATTATCGTGGTTCAAGCTGGAGAAGGGACACCTGA
AA sequence Show only first row Show all	>Lus10013326 pacid=23151409 polypeptide=Lus10013326 locus=Lus10013326.g ID=Lus10013326.BGIv1.0 annot-version=v1.0 MGVPSFYRWLVRKYPNIVVKARLQQEQDSGPNYSVPNGFDQQFDNLYLDMNNIIHPCFHPEDPSQPFPPTTFGQVHAAMFEYIDHIFSIVRPRKLLYLAI DGVGPRAKMNQQRARRFRSAKDKDAMEQEEDVLRKQFEIEGKKLLPKLETEVSDSNIITPGTEFMFQLSKKLEQYVTLKMETCPGWKDIKVVLSDANVPG EGEHKIMSFIRHQRSLPGYNPNTRHCIYGLDADLILLALATHEVHFSILREDVTVKEEQPICLSSLKTSLSTLESKSRGWFGGQKPKIQKASFIRKPYQF LQIWTLRDYLEIDMNIPDPPEKFTFDLERAIDDFVFICSFAGNDFLPHMPTLEIHEGALDLLMNVYKEHFKSLGGYLVDMQRIQDPNTGFIKLKRVEKFI LEVGKFEDRIFKKRSELKDLMLEKIAATLLAPDNEDEVLDLSSTSNESSLTAEDQVKLGSDGWRKRYYEEKFSSETTTKVVVQKYTEGLLWVLQYYYSGV PSWKWYYPYHHGPFASDLKGLAQVKVKFQRGSPFKPFEQLMAVLPPQSGHALPKPYQKLMTDSKSNIIDFYPTDFIIDMHGKRFSHQGICKLPFVDEQLL LDEVDKVEKELKAHESERNKQNTERLYMRTSSFPDDQLVLLFSSPSEKKLDITLCGIGGLVRYDSEDLDIAGLDFQELKNSITAKKILCVFFKLPSGTSH NIPRPLEGTSFPDKVRVFSSEKRCEGFETLLMVVCYVYWIMQTITEADIDVIQLWHEIPIRKYTNSNWQRSNWSRNPGEHQQQYNYNNYAMDSNSNSFRS NHVPAKRFTASPSVNINLSGPAGSGFSMCRGRGNNVNPPHPAPAVSSSVRATTCLKYSGYYNRYNNNNKNVWRQPLQSDNAKSDDAAKSHGQWRSSSSSS GNYQSVHGYGRGNNYVNGPQGYYRGSSWRRDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10013326 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10010239 [exp]	2.2	0.8882
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	4.2	0.9112
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	17.7	0.8921
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	20.8	0.8926
					Lus10018556 [exp]	25.5	0.8815
					Lus10014936 [exp]	26.6	0.8237
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	28.5	0.8871
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	30.0	0.8595
AT2G20080			unknown protein		Lus10012982 [exp]	31.0	0.8711
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	31.9	0.8893

Compare expression of checked genes

Lus10013326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.