Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11660 112 / 1e-30 NHL1 NDR1/HIN1-like 1 (.1) AT3G44220 112 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35970 107 / 9e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 107 / 1e-28 NHL22 NDR1/HIN1-like 22 (.1) AT5G06330 106 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 106 / 3e-28 NHL12 NDR1/HIN1-like 12 (.1) AT5G22200 105 / 8e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 97 / 8e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 88 / 3e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 81 / 2e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043410 [exp] 162 / 1e-49 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 152 / 1e-45 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 99 / 2e-25 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 97 / 1e-24 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10005214 [exp] 90 / 6e-23 AT3G44220 49 / 6e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 92 / 8e-23 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 90 / 5e-22 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10010103 [exp] 84 / 1e-19 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 80 / 5e-18 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019600 [exp] 123 / 6e-35 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 117 / 1e-32 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 116 / 5e-32 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.005G088000 [exp] 106 / 3e-28 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 89 / 1e-21 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 86 / 2e-20 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 85 / 6e-20 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 75 / 3e-16 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10013327 pacid=23151382 polypeptide=Lus10013327 locus=Lus10013327.g ID=Lus10013327.BGIv1.0 annot-version=v1.0 ATGACCAGCTCGACCTCCGTCACCATCCCGGCCGACGCCGTCTTCCCCGCCGACAACAAAACCAAATCCTCCTTCTCCTCCTCCAAAACCATATGCTCCA TCATAATAGCCGTCATCGTCGTCATCACCATCGTCATCACGTGGGCCATCCTCCGTCCACTGAAGCCGATATTCAACCTCGAAAACACAACCCTCTACGC CTTTAACCTAACCGACGACTCCAACCGCCTCCTAACCACCTCCCTCCAAGCCACCCTCTCCACCCGCAACCCCAACCGCCGACTAGGCATCGATTACGTC ACCCTGGGGACCTACGTCTCATACCGCGGCCAGCCGATCACTCTGCCCGTGGAGCTTCCCCAGGGTTACTTGGCGAGCAAGGAATCCGTCGAATGGTCCC CGGTGTTGTCCGGAGAGAGCGTACCGCTCTCTCCAGAATTGGCGGCCACGCTGGGACAGGATTTGAACGCTGGAGTTTTGCTATTGGAGCTGAAGGTGTA CGGACAGCTGAGGTGGAAAGTCGGGACGGTGGTGGTGACGTGGTGCAAGCATCGTCTGAATGTCAATTGCCCGGCTTCCCTAATGGCGTCAAGTGGGATT GGCGGTATGGTTAACGGCAGCCGCGGGATTGGCGGTATGGTTAACGGCCGAGGTAGGGTTTGGCCTGCTAATCAAGGGTGTTATGTTGAAGTCTAG
AA sequence Show only first row Show all	>Lus10013327 pacid=23151382 polypeptide=Lus10013327 locus=Lus10013327.g ID=Lus10013327.BGIv1.0 annot-version=v1.0 MTSSTSVTIPADAVFPADNKTKSSFSSSKTICSIIIAVIVVITIVITWAILRPLKPIFNLENTTLYAFNLTDDSNRLLTTSLQATLSTRNPNRRLGIDYV TLGTYVSYRGQPITLPVELPQGYLASKESVEWSPVLSGESVPLSPELAATLGQDLNAGVLLLELKVYGQLRWKVGTVVVTWCKHRLNVNCPASLMASSGI GGMVNGSRGIGGMVNGRGRVWPANQGCYVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	8.4	0.8611
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030841 [exp]	8.5	0.8322
					Lus10019466 [exp]	13.0	0.7826
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	13.3	0.8645
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	13.7	0.8552
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	14.0	0.8620
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	14.6	0.8972
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	16.2	0.8469
					Lus10014739 [exp]	17.1	0.8832
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	17.7	0.8350

Compare expression of checked genes

Lus10013327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.