Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 476 / 1e-155 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT1G75660 472 / 1e-153 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 337 / 3e-102 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013326 [exp] 875 / 0 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 460 / 2e-151 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10012434 [exp] 452 / 3e-145 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10020397 [exp] 454 / 2e-144 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10000941 [exp] 427 / 3e-138 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 386 / 6e-121 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10015946 [exp] 375 / 3e-117 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10005213 [exp] 283 / 3e-89 AT1G75660 220 / 2e-64 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 256 / 4e-73 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 464 / 3e-151 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 456 / 8e-148 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 437 / 4e-139 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.013G070200 [exp] 422 / 2e-132 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.002G024100 [exp] 307 / 2e-91 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Lus10013328 pacid=23151414 polypeptide=Lus10013328 locus=Lus10013328.g ID=Lus10013328.BGIv1.0 annot-version=v1.0 ATGGGAGTCCCTTCGTTTCACAAATGGTTAGTAAGCAAGTACCCAAAGATAGTTGTCAAAGCTCTGGTTCATCACCAAGAAGAAGATTCTGGCTCTACCA GCATCAACCCAAATGGGTTGGAGTACTTCGACAATCTTTACCTGGATATGAACAACATCATCCACCCTTGCTTCCACCCTGATGATCCTTCTCATCCATC CCCACCAACTACGGTCGACCAAGTCCACGATGCCATATTCGAGCAAGTTGATCACATTTTCAGCATCGTTAGGCCAAGGAAACTGCTGTATATGGCGATA GATGGAGTTGGTCCACGTGCTAAGATGAACCAACAACGAGCCAGGCGGTTTCGGTCTGCTAAGGATAACGATGCGATGGAACAAGAGGAAGATGTTTTGA GAAAGCAGTTTCAGATGGAAGGCAAGCAGCTCCTTCCAAAGCTGGAGACCGAAGTTTCCGATTCGAACATCATAACTCCAGGGACAGAGTTCATGTTCCA GCTCTCGAAGAAGCTCGAACAATATGTAACACTCAAGATGGAGACTTGTCCCGGATGGAAGGACATTAAGGTTGTACTTTCGGATGCGAATGTTCCTGGG GAAGGTGAACATAAGATCATATCCTTCATTCGTCACCAGCGTAGCCTTCCTGGATATAATCCAAATACTCGACATTGCATCTATGGCCTGGATGCTGACT TGATCCTGCTGGCCTTGGCAACTCATGAAGTACACTTCTCCATACTCCGAGAGGATCTGAACATTAAACAAGAACCACTTTGCTTATCCACTTTGAAAAG CAGCCTTTCGAAAGCAGATGCTCTCGAATTCGAATCGCTGGAGATTCACATGAACATCCCTGATCCTCCAGAGAATTTCAGCATCGATCTTGAGCGTGTG ATCGATGACTTCGTATTCATCGGCTCTTTTGCTGGAAATGATTCTCTTCCCCACATGCCTACACTTGGACATCATGAGGGTGCTATTGATCTCTTGATGG AAGTTTATAAGCAACATTTCAAAAGTCTGGGTAGCTACCTAGTAGACATGCAAAAGGTTCAGGATCCTGAAAATGGGTTCATCAAGTTGGAAAGAGTAGA GAAGTTCATCCTCAAGGTTGGGAAATTCGAGGATAAGATTTTCAAGAAACGATCCGAACTCAAATATCTAATGCTTGAGAAGATTGCTGCAGATAATGAA GATGAGATTGCGGATTTGAGTTCGAATTCGAATGGAAGTGCTCTGACAGCAGAAGATCAGGTTGTGAAGAACACGATGGAGTTGAAAGAAAAGCTGAGAG CTTGCATTTGGAAGAAATCTGATGCCTTCAAAAAGGGTAGTTTGGTAACTGACAAGCTTGCCAATGTCAGGTACTATCCGTATCATTATGGACCGTTCGC ATCTGATCTAAAGGGACTTGGTCAAGTAAAAGTGAAGTTCCAAAAGGGATCACCTTTCAAACCATTTGAACAGCTCATGGCTGTACTACCTCCTCGAAGT GTACTTGCACTTCCTAAGCCATATCAGAAACTCATGACGGATATCAAGTCAAATATCATCGACTTCTACCCTACCGATTTCGAATTCGACATGAATGGAA AGAGATTTTCACGCCAGGGAATATGCATGCTTCCATTCGTTGATGAACAACGGCTTATAGCTGAGGTGAATAAGCTTGAGAAAGAACTTGATGCATATGA ACTGGAGAGAAACAGACACCACACTGAGAGGCTCTACATCAGAGAAGGAACTCCAGAAAGTTTTTTCGTCGAGCTGCCTTCAGGAAGAAGCCACCACATT CCTCGTCCTCTAGAAGGAACAACATTTCCTGAAAAGAGTGCCATAACTGAAGCTGAAATTAAAGTAACTCAACTATGGCAGGATATACCGTTGCGAAGAA ACAAGAACACCAACTGGCGAAGCAGAAGTAATTGGAGCGGAACCCCTGAAGAAGAACAACAAAGCTATAATGCTCCTGCAAAGAGATTCATAGGTTACTG TACTCCTCCCACTCCAAGTGCAAACATCAAGCTTTCCGGACCAGCAGGATCGGGTTTCAGCGCTGGCAGGGAAGAGGAAATGTGCATTTTGGATACGACA ACGACAGCAACAGTGTGGGGACATATAGCAGCAGCAGTAGAAACCATGGTTCATGGAGGCAGCCATTTCAGTTCTGACGTGGAGGGGAAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10013328 pacid=23151414 polypeptide=Lus10013328 locus=Lus10013328.g ID=Lus10013328.BGIv1.0 annot-version=v1.0 MGVPSFHKWLVSKYPKIVVKALVHHQEEDSGSTSINPNGLEYFDNLYLDMNNIIHPCFHPDDPSHPSPPTTVDQVHDAIFEQVDHIFSIVRPRKLLYMAI DGVGPRAKMNQQRARRFRSAKDNDAMEQEEDVLRKQFQMEGKQLLPKLETEVSDSNIITPGTEFMFQLSKKLEQYVTLKMETCPGWKDIKVVLSDANVPG EGEHKIISFIRHQRSLPGYNPNTRHCIYGLDADLILLALATHEVHFSILREDLNIKQEPLCLSTLKSSLSKADALEFESLEIHMNIPDPPENFSIDLERV IDDFVFIGSFAGNDSLPHMPTLGHHEGAIDLLMEVYKQHFKSLGSYLVDMQKVQDPENGFIKLERVEKFILKVGKFEDKIFKKRSELKYLMLEKIAADNE DEIADLSSNSNGSALTAEDQVVKNTMELKEKLRACIWKKSDAFKKGSLVTDKLANVRYYPYHYGPFASDLKGLGQVKVKFQKGSPFKPFEQLMAVLPPRS VLALPKPYQKLMTDIKSNIIDFYPTDFEFDMNGKRFSRQGICMLPFVDEQRLIAEVNKLEKELDAYELERNRHHTERLYIREGTPESFFVELPSGRSHHI PRPLEGTTFPEKSAITEAEIKVTQLWQDIPLRRNKNTNWRSRSNWSGTPEEEQQSYNAPAKRFIGYCTPPTPSANIKLSGPAGSGFSAGREEEMCILDTT TTATVWGHIAAAVETMVHGGSHFSSDVEGKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10013328 [exp]	0	1
					Lus10003536 [exp]	4.0	1.0000
					Lus10011425 [exp]	5.5	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	6.9	1.0000
					Lus10029107 [exp]	10.5	1.0000
					Lus10028667 [exp]	11.1	1.0000
					Lus10022214 [exp]	14.2	1.0000
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	14.8	1.0000
					Lus10022518 [exp]	15.5	1.0000
					Lus10009727 [exp]	15.9	1.0000
AT5G22450			unknown protein		Lus10000530 [exp]	17.8	1.0000

Compare expression of checked genes

Lus10013328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.