Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 535 / 0 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 269 / 1e-83 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79360 223 / 2e-66 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 215 / 2e-63 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G16370 186 / 1e-52 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G79410 179 / 4e-50 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT3G13050 89 / 8e-19 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT4G36670 61 / 1e-09 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 57 / 1e-08 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G18830 57 / 3e-08 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014801 [exp] 583 / 0 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 317 / 9e-103 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10026758 [exp] 159 / 9e-45 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 122 / 5e-31 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10025543 [exp] 94 / 8e-23 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10043061 [exp] 98 / 4e-21 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 95 / 2e-20 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 92 / 1e-19 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 81 / 8e-16 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130533 [exp] 577 / 0 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.015G029400 [exp] 268 / 5e-83 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.012G037400 [exp] 246 / 1e-74 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 215 / 1e-63 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 189 / 1e-53 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.016G039000 [exp] 180 / 4e-50 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.007G003000 [exp] 109 / 2e-25 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 98 / 2e-21 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 94 / 3e-20 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 79 / 4e-15 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10013330 pacid=23151357 polypeptide=Lus10013330 locus=Lus10013330.g ID=Lus10013330.BGIv1.0 annot-version=v1.0 ATGCCTCCAGGAAACGAAGAATCCCCACTGTCGGAGCCATTCCTGCCGTCGACGACGGCATCGGAGCAGCTGACCATAGACGAGATGCTGCAGAAGCACT GCGGGGAGTTCGGCAGGTGGCAGCTCCGCCACTTTGCGTTGACCAACTTAGCACTCACACTCGAGGCCTTCCACACCATGGTCATGGTCTTCACCGACAG GGAGCCTGACTTCAGGTGCCTCGCCGCCGGCGGAGGTGGATGCGACGAGGCGGCGGAGAGCGTCTGCGGGTTGGCTCCCGGGTCGTGGGAGTGGGTCGGA AGTAGCACGACGGTGTCGGAGTGGGGGTTGGTATGTGGAGAGAAGTACAAAGTTGGACTTGTCCAGTCAGCATTCTTTGTTGGGTGCTTGATAGGTGCAG GGACGTTCGGGTATCTAGCGGATTCAACGCTGGGAAGGAAAGGCGCGCTTACCGCCGTCTGCATCATCCACGCTGTCTCCGGCATTTTAACAGCGTTCTC CCCAAACTACTGGACCTACATCCTCCTCCGTCTCCTTACCGGCGTAGGCTCCGGCGGCGTGGGCCTCACCTCCTTCGTCCTCTCCACAGAGCCGGTAGGA CCTACCAAGCGGGGAGTCGTTGGCGGTTCGTCCTTCTACTTCTTCTCCTCCGGGATAGCTCTCCTCTCCATCATCGCCTACTTCGTTCGACCTTGGCGAT TGCTCTACATTGTGTCATCGGTTCCTTCCGTTGCATACCTCGTCATAGTTCTCCCCTTCATCTCTGAATCTCCGCGATGGTACTTAGTCCGAGGCAGAGT CCAAGAAACCATAAAAGTAATGCGCGCAATCGCACGATCGAATAATAAACATATCCCGAACGATGTTGTTTTAACGCTCGACGAAGATGTCACAAGGAAA AACGACGACAAAAAGGAAGGCGAAATTACTACCGGCACACTAATCCACGTGATCAGGTCACCCATAACCCGAACAAGACTTCTCACATCCATGATAGTAA CCTTCCTCTCCTCCACCGTATACTACGGCTTGAGCCTCAATGTGGTCAATCTCGACACAAACCTCTACGCCAATGTGGCAATCAACGCACTTGCCGAGAT GCCTTCCTTCACTTTGACCGCCGCCCTGCTGGACAGGTGGGGCAGGAAACCACTGGCGAGTGGAACCCAGCTGTTCACGGGTGTCTTCTGCCTACTGGGT GGGAGCATAGTTATTTCCACGCGCGGTGGAGGTGCGTGGGCGGTGGTGAAGACGACGTGTGGGGTGATGGGAGTGTTCGGCGCCGCCGGGACGTACAATT TGTTGTATATCTACGGGGCGGAGCTGTTCCCAACGGTGGTGAGGAACGCTGCGTTGGGTTGCTTGGTGCAGACGGCTCAGGTGGGTGCTATCCTTGCGCC GTTTGTTGTTGTGATGCCGAGCTGGCTGCCATTTACAGCTTTGGCGGCGTGTGCCGTCGGTGGCGGGTTGCTGACGTTTCTTTTGCCGGAGACGCTGAAT CAGCCTTTGTATGATACCATTGCCGGGATTGAGGGAGCTAATTGGGGAGCGTAG
AA sequence Show only first row Show all	>Lus10013330 pacid=23151357 polypeptide=Lus10013330 locus=Lus10013330.g ID=Lus10013330.BGIv1.0 annot-version=v1.0 MPPGNEESPLSEPFLPSTTASEQLTIDEMLQKHCGEFGRWQLRHFALTNLALTLEAFHTMVMVFTDREPDFRCLAAGGGGCDEAAESVCGLAPGSWEWVG SSTTVSEWGLVCGEKYKVGLVQSAFFVGCLIGAGTFGYLADSTLGRKGALTAVCIIHAVSGILTAFSPNYWTYILLRLLTGVGSGGVGLTSFVLSTEPVG PTKRGVVGGSSFYFFSSGIALLSIIAYFVRPWRLLYIVSSVPSVAYLVIVLPFISESPRWYLVRGRVQETIKVMRAIARSNNKHIPNDVVLTLDEDVTRK NDDKKEGEITTGTLIHVIRSPITRTRLLTSMIVTFLSSTVYYGLSLNVVNLDTNLYANVAINALAEMPSFTLTAALLDRWGRKPLASGTQLFTGVFCLLG GSIVISTRGGGAWAVVKTTCGVMGVFGAAGTYNLLYIYGAELFPTVVRNAALGCLVQTAQVGAILAPFVVVMPSWLPFTALAACAVGGGLLTFLLPETLN QPLYDTIAGIEGANWGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10013330 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Lus10020895 [exp]	5.2	0.9093
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	5.7	0.8841
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041224 [exp]	28.2	0.8305
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	40.5	0.8727
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	43.2	0.8235
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10021298 [exp]	44.3	0.8111
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10001139 [exp]	48.0	0.8703
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	57.1	0.8630
AT1G75590			SAUR-like auxin-responsive pro...		Lus10034507 [exp]	59.9	0.8452
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	60.5	0.8456

Compare expression of checked genes

Lus10013330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.