Plant FIBer expression Database

Lus10013331 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000324
[exp]
228 / 1e-75 AT2G35980 47 / 5e-06 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G218201
[exp]
103 / 4e-27 ND /
Potri.009G019900
[exp]
102 / 1e-26 ND /
PFAM info
Representative CDS sequence
>Lus10013331 pacid=23151383 polypeptide=Lus10013331 locus=Lus10013331.g ID=Lus10013331.BGIv1.0 annot-version=v1.0
ATGACCGGCCCCGCCCCCGCCGTCACCACCGTTCTCATCTACCTCCAGCCCTCCCTCCCCATCTTCGCCGTCAACTCCTCCACCGTAACCGTCGTCGACG
TCTCTTCCAGCCTAGTAACCGCTCGATGGGATTTAAAATTCTCCGTCACAAACCCTAACGGCAATTCCAACGCCTTCACTTACAACCGCCTCGTCGTTTA
CGCCGTCAGTGGGGCCTACGGCCGACTAGCCAATTTCTCGGAACCCACGCCCTTCCGCCAGCCTGGACGGGGGACCCCACCTACCAGCCTGTCCGCTTCG
TTCCCGTCGCTGAGGTTCGTGGTCGACGATTGTACCGATAACGCGACCTTCGTAAGGGGTTGCTCGCCGGTGCAGCTGAGCGTGGAGCTGGAGGCGGCGG
TGGTTTACGACGGCAGGTGGACGTGGCCGTACAAGGGTAATTTGGTCAAGGTGGAGTGTGACGTGGCTAACGTAACGTTTGTGCCGAATTCCCCTTCGAC
GGAAGTGGGCCCCCTTGCCTGTCGGTCGGACGCGCGGTGGAAGCGGTTGGAGGATAACTGCCGGGAGATATTTTGGCATTACGTTTACATTGCGTCGATG
TGCTTAGGGATTTTGGCATTTTCGCTTTAG
AA sequence
>Lus10013331 pacid=23151383 polypeptide=Lus10013331 locus=Lus10013331.g ID=Lus10013331.BGIv1.0 annot-version=v1.0
MTGPAPAVTTVLIYLQPSLPIFAVNSSTVTVVDVSSSLVTARWDLKFSVTNPNGNSNAFTYNRLVVYAVSGAYGRLANFSEPTPFRQPGRGTPPTSLSAS
FPSLRFVVDDCTDNATFVRGCSPVQLSVELEAAVVYDGRWTWPYKGNLVKVECDVANVTFVPNSPSTEVGPLACRSDARWKRLEDNCREIFWHYVYIASM
CLGILAFSL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10013331
[exp]
0 1
AT3G49220 Plant invertase/pectin methyle... Lus10018103
[exp]
3.5 0.8453
AT5G50790 SWEET10, AtSWEE... Nodulin MtN3 family protein (.... Lus10008861
[exp]
3.6 0.8904
AT1G52700 alpha/beta-Hydrolases superfam... Lus10014347
[exp]
5.2 0.8653
AT3G10960 ATAZG1 AZA-guanine resistant1 (.1) Lus10009102
[exp]
6.6 0.8363
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Lus10020785
[exp]
8.5 0.8677
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Lus10042166
[exp]
8.8 0.8340
Lus10005901
[exp]
10.6 0.8448
AT1G31740 BGAL15 beta-galactosidase 15 (.1) Lus10043422
[exp]
14.1 0.8425
AT1G11600 CYP77B1 "cytochrome P450, family 77, s... Lus10007659
[exp]
14.1 0.8439
Lus10037540
[exp]
14.5 0.8372

Lus10013331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.