Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 613 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013333 [exp] 1215 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 1192 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10021721 [exp] 608 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10034647 [exp] 595 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 578 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1) Lus10013336 [exp] 299 / 2e-94 AT1G73990 231 / 2e-69 signal peptide peptidase (.1) Lus10013335 [exp] 261 / 3e-83 AT1G73990 174 / 7e-51 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 601 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10013332 pacid=23151347 polypeptide=Lus10013332 locus=Lus10013332.g ID=Lus10013332.BGIv1.0 annot-version=v1.0 ATGGCATCGCTACAACAATTACTAAACCCTCCCAACATCCCCTGCCGCCACCGTACCTCTGCCTCACTCCTCCTCTCCAACCCAAACAAAAACTTCCTCC GCCAGCCGTTTCCTCAATCAACCGTCGCCATCCGCCGCCGCCACATCCAACTCAATCACCACAATTCCCTCTTTTCATCTCCCCACTCCATGATCAAAAG AAACCACCCTCCAATTCAAGCTTTCGATTCAACCGAAACAGAGGTCATCACCATCGATTCCAACGACGGCGCCGTCGCCGTCCCTCCACCGGCAGCTGCA CCAACCAGGTTTCAAAAACAGGCGGCGGCGATGGACGAGTTCCCTGGAGAAAACGGGCCGGCGTTCGAAATCCGAAAAGAAGTCAACGGATGGGAAAAAT TGCTCCTCAACCTCCGGCTGCTCGTCGCTCCGCCGTGGCAGAGAGTCGCTAACGGCAGCGTTCTGTGTATCAACTTCGGCGGAACGATATCGGACGTTAA AGGACGTTGGTTCTCGCCGGAACTGACGCTTCCGGAGATTTGTGAGAATTTCGCCAAGGCGGCGAACGATCCTCGTATTTCAGGGATTCTTGTGACGTTC AACTTCATAGAGTGTGGGTGGGCGAAATTGGAAGAAATTCGTCGCCATATTTTGGAATTCCGAAAATCAGGAAAATTTGTGGTTGGGTACATGTACGCAT TCAGGGAGAAAGAGTATTACCTTGGTTGTGCATGTGACGAGTTATATGCACCTACATTGGCTCCCTTCTCTTTATATGGCTTCACTCTTGGGTCGCAATT TTTTCGAGGTATACTGGAGAAGCTGGGTATGGAACCGCAATGGGTTAGGATTGGCAAGTTCAAGAAAGCAGGGGACCAAGTGATACGAAAGACAATCTCT GAGCCGCATCTCGAGGTCCTGAACAGCATGCTCGATGGCCGATACGAAAATTGGGTTGAAACTGTTTCTTCCGCCACAGGAAAGACGAGAGAGGAAGTGG AAAGCTTCATTAATGAAGGTGTGTACGAGATGGAGCGGGTGAAAGAAGCGGGGTTGATAACTGACATACTCTACGAAGAGGACGTGATGTCGATGTTGAA AGCGAGACTTGGAGTTCCAAAGGAGAAAGATCTGCCTACTGTTGACTATAAGCGATACTCGAAAGTAACAAATTGGACACTGGGGTTAAACGCCGGAGAA GATTCAATAGCTGTGATCCGAGCAAGTGGCATGGTCGTCGGTAAATGGGGTATATTGAACTTTCCTGGCTCTGCCATAACTCCCGACAACATCATAAAAC AGTTTCGTATAATCCGAGACTCGAAGAAAATCAAAGCAGTAATCTTCAGGATCGATTGCTGTGGCGGCGAGGCTCTTGCATCAGATATAATATGGAAGGA GATGCAGCTACTGGCGAAAGAAAAACCGGTTATAGCATCACTGTCTGACATGGCAGCCAGTGGCGGCTACTACATTGCGATGGGAGCAACTGCCATCGTC GCTGAGAAGTTGTCGGTAGCTTCTTCGATCGGTATCATTCAAGGTAAAATGAACTTCTCCGAGTTTCACAAGAAAATTGGGTTGAACAAGCACATTGTAT CAAGGGGTAGATACGCCGAGTTCCCTACGTGTGGACATAGACCCCTGAGGCCGGACGAGAAAGCCCTTCTGGAGAACCAAACTATGTACTGGTACAAAAT ATATCGCGATAGAGCAGCATTGTCTCGTAACATGAGCATAGAAGATACGGAAAAGGTGGCACAAGGCAGAGTATGGAGTGGAGAGGAAGCGGTTTCAAAC GGTTTAGCAGATGCAGTTGGCGGTATGGCTCGGGCTATAGCCATCGCCAAGCACAAGGCTAATATCCCCCTCGATAAACCCGTAAAGATTGTGGAGCTAT CGAAACCGAATTCGTCACTGCCGGAGTACATAGCTGCTTTCGGGACTACTATAGCTGGACTAGGCAGAGGATCAGCGATGGTATCGGCATACAGCGGTGC TCAAGCTCGACTCGATGGGGGGGATTCCGACAACCCGATTTTTGCTATAATGAAGTATTTTCTCGAGTTCAGTCAGACCGGGGCGGTGCAGGGCTCTATG AATGAGCTCTTGTAA
AA sequence Show only first row Show all	>Lus10013332 pacid=23151347 polypeptide=Lus10013332 locus=Lus10013332.g ID=Lus10013332.BGIv1.0 annot-version=v1.0 MASLQQLLNPPNIPCRHRTSASLLLSNPNKNFLRQPFPQSTVAIRRRHIQLNHHNSLFSSPHSMIKRNHPPIQAFDSTETEVITIDSNDGAVAVPPPAAA PTRFQKQAAAMDEFPGENGPAFEIRKEVNGWEKLLLNLRLLVAPPWQRVANGSVLCINFGGTISDVKGRWFSPELTLPEICENFAKAANDPRISGILVTF NFIECGWAKLEEIRRHILEFRKSGKFVVGYMYAFREKEYYLGCACDELYAPTLAPFSLYGFTLGSQFFRGILEKLGMEPQWVRIGKFKKAGDQVIRKTIS EPHLEVLNSMLDGRYENWVETVSSATGKTREEVESFINEGVYEMERVKEAGLITDILYEEDVMSMLKARLGVPKEKDLPTVDYKRYSKVTNWTLGLNAGE DSIAVIRASGMVVGKWGILNFPGSAITPDNIIKQFRIIRDSKKIKAVIFRIDCCGGEALASDIIWKEMQLLAKEKPVIASLSDMAASGGYYIAMGATAIV AEKLSVASSIGIIQGKMNFSEFHKKIGLNKHIVSRGRYAEFPTCGHRPLRPDEKALLENQTMYWYKIYRDRAALSRNMSIEDTEKVAQGRVWSGEEAVSN GLADAVGGMARAIAIAKHKANIPLDKPVKIVELSKPNSSLPEYIAAFGTTIAGLGRGSAMVSAYSGAQARLDGGDSDNPIFAIMKYFLEFSQTGAVQGSM NELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	1.7	0.9722
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	1.7	0.9643
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	4.5	0.9691
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	6.6	0.9369
AT1G17860			Kunitz family trypsin and prot...		Lus10039208 [exp]	8.0	0.9412
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019800 [exp]	8.1	0.9434
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	8.7	0.9263
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	8.8	0.9522
					Lus10027915 [exp]	8.8	0.9542
					Lus10022008 [exp]	8.9	0.9566

Compare expression of checked genes

Lus10013332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.