Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 602 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013332 [exp] 1214 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 1209 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10021721 [exp] 590 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10034647 [exp] 578 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 568 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1) Lus10013336 [exp] 287 / 6e-90 AT1G73990 231 / 2e-69 signal peptide peptidase (.1) Lus10013335 [exp] 254 / 2e-80 AT1G73990 174 / 7e-51 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 594 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10013333 pacid=23151374 polypeptide=Lus10013333 locus=Lus10013333.g ID=Lus10013333.BGIv1.0 annot-version=v1.0 ATGGCTGAGCTAAAACAATTACTAAACCCTCCCAATATCCCCTGCCGCCACCGTACCTCTGCCTCACTCCTCTCCATCCCAAACAAAAACTTCCTCCGCC AGCCGCTTCCTCAATCAACCGCCGCCATCCGCCGCCGCCACATCCAACTCAATCACCACGGTTCCCTCTTTTCATCTCCCCACTCCATGATCAAAAGAAA CCCATCTCCAATTCAAGCTTTCGATTCCGCCGAAACAGAGGTCATCACCATCGACTCCAACAACGGCGCCACCGCCGTCGGCCCTGTAGAACCTGCACCA ACCAGGTTTCAAAAACAGGCGGCGGCCAAGGACGAGTTACCCGGAGAAGGGTGTCCGGCGTTCGAAATCCGAAACAAAGAAATCGAGGGATGGGAGAAGT TGCTTCTGAAGCTCCGGCTGCTTGTCGCTCCTCCGTGGCAGAGAGTTGCTCATGGCAGCGTTCTGTGTATCGACTTAGGCGGACCGATATCGGACGTTAA AGGACGGTGGTTATCGCCGGCACTGACGCTGCCGGAGATTTGTGAGAATTTCGCCAAGGCGGCGAACGATCCTCGGATTTCGGGGATTCTTGTGAGGTTC AACTTCATAGAGTGTGGGTGGGCGAAATTGGATGAAATTCGTCGCCATATTTTGGAATTCCGGAAATCAGGAAAATTTGTGGTTGGTTACATGTATGCCT TTTGGGAGAAAGAGTATTACCTTGGTTGTGCATGTGACGAATTATATGCACCTACATTGGCTCCCTTCTCTTTGTATGGCTTCACTCTACCTGCGGTGTT TTTTAGAGGTATACTGGACAAGCTGGGTATGGAACCGCAATGGGTTAGGATTGGCAAGTTCAAGAAATTTGGGGACCAAGTGAGACGAAAGACTATCACC GAACCACATCTCGAGGTCCTGAACAGCTTGCTTGATGGCCGATACGAGAATTGGGTTGAAACTGTTTCTTCTGCTACAGGAAAGACGAGAGAGGAAGTGG AGAGCTTCATTAATGAAGGTGTGTACGAGATGGAGCGGGTGAAAGAAGCAGGGTTGATAACCGACATACTCTACGAAGAGGATGTGATGTCAATATTGAA AACGAGGCTTGGAGTTCCGAAGGAGAAAGATCTGCCTACAGTTGATTATAAGAGATACTCGAAAGTAACAAACTGGACACTGGGGTTAAACTCCGGAGAA GATGCCATAGGTGTGATCCGAGCATGTGGTAACATCGTCGAAAAATGGGATTTGCTGAACGCGCCTGGCTCTGGCATAATTCCTGACGACATCATTAAAC AGTTTCGTATAATCCGAGAGTCAAAGAACATCAAAGCAGTAATCTTCAGAATCGACTGCTTTGGCGGTGATGCTCTTTCATCGGATATAATATGGAAGGA GATGAGGCTACTGGCTAAAGAAAAACCAGTGATAGCATCACTATCAGACATGGCGGCCAGCGGGGGCTACTACATTGCAATGGGGGCGACTGCCATCGTC GCGGAGAAGTTGTCGGTAGCTTCTTCGATTGGTATCATTCAAGGTAAAATGAACTTCTCCGAGCTTCATCAGAGAATAGGGTTGAACAAGCACATTGTAT CAAGGGGTAGATACGCCGAGTTCCCTACGTGTTCGCATCGACCCTTGAGGCCGGACGAGAAGGCCCTTCTGGAGGACCAAACTATGTACTGGTACAAAAA ATATCGCGATAGTGCAGCATTGTCCCGTTCCATGAGCAAAGAAGATATGGAAAAGGTGGCACAAGGCAGAGTGTACAACGGAGAGGACGCGGTTTCAAAC GGTTTAGTGGATGCAGTTGGCGGTATGGCTCGGGCTATAGCTATCGCCAAGCACAAGGCTAATATCCCCCTTGATAAACCCGTAAAGATTGTGGAGATAT CGAAACCGAATTCAGGATTGCCGGAGTTCTTAGGTATTTTGGGGAATACTATAGCTGGCCTAGGCAGAGCATCGGCGATGGCATCAGCATATAGCGGAGC TCAAGCTCGGTTCGATGGGGGAGATCTCGATAACCCCTTTTTCGCTATAATGAAATATTTTCTCGAGTTCAGCCAGACCGGGCCGGTGTAG
AA sequence Show only first row Show all	>Lus10013333 pacid=23151374 polypeptide=Lus10013333 locus=Lus10013333.g ID=Lus10013333.BGIv1.0 annot-version=v1.0 MAELKQLLNPPNIPCRHRTSASLLSIPNKNFLRQPLPQSTAAIRRRHIQLNHHGSLFSSPHSMIKRNPSPIQAFDSAETEVITIDSNNGATAVGPVEPAP TRFQKQAAAKDELPGEGCPAFEIRNKEIEGWEKLLLKLRLLVAPPWQRVAHGSVLCIDLGGPISDVKGRWLSPALTLPEICENFAKAANDPRISGILVRF NFIECGWAKLDEIRRHILEFRKSGKFVVGYMYAFWEKEYYLGCACDELYAPTLAPFSLYGFTLPAVFFRGILDKLGMEPQWVRIGKFKKFGDQVRRKTIT EPHLEVLNSLLDGRYENWVETVSSATGKTREEVESFINEGVYEMERVKEAGLITDILYEEDVMSILKTRLGVPKEKDLPTVDYKRYSKVTNWTLGLNSGE DAIGVIRACGNIVEKWDLLNAPGSGIIPDDIIKQFRIIRESKNIKAVIFRIDCFGGDALSSDIIWKEMRLLAKEKPVIASLSDMAASGGYYIAMGATAIV AEKLSVASSIGIIQGKMNFSELHQRIGLNKHIVSRGRYAEFPTCSHRPLRPDEKALLEDQTMYWYKKYRDSAALSRSMSKEDMEKVAQGRVYNGEDAVSN GLVDAVGGMARAIAIAKHKANIPLDKPVKIVEISKPNSGLPEFLGILGNTIAGLGRASAMASAYSGAQARFDGGDLDNPFFAIMKYFLEFSQTGPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	0	1
AT3G49601			unknown protein		Lus10034691 [exp]	1.0	0.9629
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	1.4	0.9460
					Lus10036060 [exp]	2.8	0.9002
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	3.2	0.8987
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	3.7	0.8414
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	7.1	0.9089
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	10.2	0.8438
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	10.4	0.8827
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	15.0	0.8647
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	16.5	0.7966

Compare expression of checked genes

Lus10013333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.