Plant FIBer expression Database

Lus10013334 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73990 604 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013333
[exp]
1209 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1)
Lus10013332
[exp]
1192 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1)
Lus10021721
[exp]
591 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1)
Lus10034647
[exp]
585 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1)
Lus10007970
[exp]
574 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1)
Lus10013336
[exp]
294 / 2e-92 AT1G73990 231 / 2e-69 signal peptide peptidase (.1)
Lus10013335
[exp]
253 / 4e-80 AT1G73990 174 / 7e-51 signal peptide peptidase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G047500
[exp]
603 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01343 Peptidase_S49 Peptidase family S49
Representative CDS sequence
>Lus10013334 pacid=23151328 polypeptide=Lus10013334 locus=Lus10013334.g ID=Lus10013334.BGIv1.0 annot-version=v1.0
ATGGCAGAGCTAAAACAATCACTAAATCCTCCCAATATCCCCTGCCGCCACCGTACCTCTGCCTCGCTCCTCCTCTCCAACCCAAACAAGAATTTCCTCC
GGCCGCTTACTCAATCAACCGCCGCCGTCCGCCGCCACCAGATCCAACTCAATCCCCACAATTCCCTTTTTTCATCTCCCCACTCCATGATAAAAAGAAA
CCCATCTCCAATTCAAGCTGTCGATTCAACAGAAACAGAGGCCATCACAGCCGATTCTAACGGCGTCGTCGCTATACCTGCAGCTGATGCACCAATCAGG
TTTAAAAAACAGGACGAGTTCCCCGGACAAGGCTGCCCGGCGTTCGAAATCCGTAACAGAGAAATCGACGGATGGGAAAACTTGCTTCTCAAACTCCGGC
TGCTCGTCGCTCCTCCGTGGCAGAGAGTTGCTCACGGCAGCGTTCTGTGTATGAACTTCGGCGGCACGATAACGGACGTTAAAGGACGGTGGTTGTCGAC
GGAAATGGCGCTCCCGGAGATTTGTGAGAGTTTCGCCAAGGCGGCGAATGATCCTCGCATTTCGGGGATTCTCTTGAAGTTTAACTTCATAGAGTGTGGG
TGGGCGAAATTGGATGAAATTCGTAGACATATTTTGGAAGTCAGAAAATCAGGAAAATTTGTGGTTGGATACATGTATGCTTTCAGGGAGAAAGAGTATT
ACCTAGGTTGTGCATGTGATGAGTTATATGCACCTACATTGGCTCCCTTCTCTTTGTATGGCTTCACTCTTCAGTCGCAATTTTTTCGAGGTATACTGGA
GAAGTTGGGTGTGGAACCGCAATGGGTTAGGATTGGCAAGTACAAGAAAGTAGGGGACCAAGTGATGCGAAAGACTATCTCTGAACCGCATCTCGAGGTC
CTGAACAGCTTGCTCGATGGGCGATACGAGAATTGGGTTCAAACTGTTTCTTCTGCTACAGGAAAGACGAGAGAGGAATTGGAGAGCTTCATTAACGAAG
GTGTATACAAGATGGAGCGGGTGAAAGAAGCAGGGTTGATAACTGACATACTCTACGAAGAGGATGTGATGTCAATGTTGAAAGCGAGACTTGGAATCCC
GAAGGAAAAAGATCTGCCTACGGTTGACTATAAGAGATACGCGAAAGTAACGAATTGGACACTCGGGTTAAACTCTGGAGAAGATGCAATAGGTGTGATC
CGAGCATGTGGCCTCGTCTCCGAAAAATGGGATCTAGTGAACGCGCCTGGCTCCGGCATAATTCCCGACAACATCATTAAACAGTTTCGTGTGATCCGAG
AGTCGAAGAAATACAAAGGAGTAATCTTCAGAATCGACTGCTGTGGCGGCGAGGCTCTTGCATCGGATATAATATGGAAGGAGATGCGGCTACTTGCGAA
AGAAAAACCGGTGATAGCATCACTGTCGGACATGGCGGCCAGCGGGGGCTATTACATTGCAATGGGGGCGACGGCCATCGTCACCGAGAAGTTGTCGGTA
GCTTCTTCGATTGGTGTCATTCAAGGTAAAATGAACTTCTCCGAGCTTCATCAGAGAATAGGGTTGCACAAGCACGTTGTATCAAAGGGTAGATTCGCCG
AGTTCCCTACTTGTGGACATCGACCCCTGCGGCCGGACGAGAAGGCCCTTCACGAGAACCAAACCATGTACTGGTACAAAATATATCGCGATAAAGCAGC
ATTGTCCCGTTCCATGAGCAAAGAAGATATGGAAAAGGTGGCACAAGGAAGAGTGTGGAACGGAGAGGACGCGGTTTCGAAGGGTTTAGCGGATGCAGTT
GGCGGTATGGCACGGGCTATAGCCATCGCCAAGCACAAGGCTAACATCCCCCTTGATAAACCCGTGAAGATTGTGGAGCTATCGAAACCGAATTCGGCAA
TACCGGAGTTCTTAGGTATTCTGGGAAATACTATAGCTGGACTAGGTAGAGCATCGACAATGATATCCGCATATAGCGGAGCTCAAGCTCGGTTTGATAG
AAGAGATTTCGACAACCCGATTTTCGCTATAATGAAGTATTTTCTCCAGTTAAGCCAGACAGGGCCAGCGCAGGGCTCTACGAGTGAGCTCTTATAA
AA sequence
>Lus10013334 pacid=23151328 polypeptide=Lus10013334 locus=Lus10013334.g ID=Lus10013334.BGIv1.0 annot-version=v1.0
MAELKQSLNPPNIPCRHRTSASLLLSNPNKNFLRPLTQSTAAVRRHQIQLNPHNSLFSSPHSMIKRNPSPIQAVDSTETEAITADSNGVVAIPAADAPIR
FKKQDEFPGQGCPAFEIRNREIDGWENLLLKLRLLVAPPWQRVAHGSVLCMNFGGTITDVKGRWLSTEMALPEICESFAKAANDPRISGILLKFNFIECG
WAKLDEIRRHILEVRKSGKFVVGYMYAFREKEYYLGCACDELYAPTLAPFSLYGFTLQSQFFRGILEKLGVEPQWVRIGKYKKVGDQVMRKTISEPHLEV
LNSLLDGRYENWVQTVSSATGKTREELESFINEGVYKMERVKEAGLITDILYEEDVMSMLKARLGIPKEKDLPTVDYKRYAKVTNWTLGLNSGEDAIGVI
RACGLVSEKWDLVNAPGSGIIPDNIIKQFRVIRESKKYKGVIFRIDCCGGEALASDIIWKEMRLLAKEKPVIASLSDMAASGGYYIAMGATAIVTEKLSV
ASSIGVIQGKMNFSELHQRIGLHKHVVSKGRFAEFPTCGHRPLRPDEKALHENQTMYWYKIYRDKAALSRSMSKEDMEKVAQGRVWNGEDAVSKGLADAV
GGMARAIAIAKHKANIPLDKPVKIVELSKPNSAIPEFLGILGNTIAGLGRASTMISAYSGAQARFDRRDFDNPIFAIMKYFLQLSQTGPAQGSTSELL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73990 SPPA1, SPPA signal peptide peptidase (.1) Lus10013334
[exp]
0 1
AT5G24090 ATCHIA chitinase A (.1) Lus10039317
[exp]
8.5 0.8364
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Lus10019729
[exp]
11.0 0.8162
AT1G03495 HXXXD-type acyl-transferase fa... Lus10029826
[exp]
13.1 0.8231
AT3G18150 RNI-like superfamily protein (... Lus10014142
[exp]
26.9 0.7753
AT2G19500 ATCKX2, CKX2 cytokinin oxidase 2 (.1) Lus10031200
[exp]
34.4 0.8116
AT5G17680 disease resistance protein (TI... Lus10012852
[exp]
41.2 0.7100
AT5G13080 WRKY ATWRKY75, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10041546
[exp]
70.9 0.7927
AT3G14460 LRR and NB-ARC domains-contain... Lus10029705
[exp]
76.3 0.7506
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Lus10021206
[exp]
85.5 0.7732
AT3G44350 NAC ANAC061 NAC domain containing protein ... Lus10004206
[exp]
130.0 0.7309

Lus10013334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.