Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 176 / 9e-52 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013332 [exp] 263 / 2e-84 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013333 [exp] 256 / 9e-82 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 254 / 5e-81 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 164 / 4e-47 AT1G73990 821 / 0.0 signal peptide peptidase (.1) Lus10021721 [exp] 149 / 1e-41 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10034647 [exp] 147 / 8e-41 AT1G73990 868 / 0.0 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 164 / 2e-47 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10013335 pacid=23151395 polypeptide=Lus10013335 locus=Lus10013335.g ID=Lus10013335.BGIv1.0 annot-version=v1.0 ATGAACTTTTCGGAGCTTCACAAAAGAATAGGGTTGCACAAACACGCCGTATCAAGGGGTAGATACGCCGAGTTCCCTTCGGTTGGGTATAGACCTCTCA GGCCAGATGAAAAGGAACTGCTGGAGAACCAAACAGAGCATTGGTACGAAATATTTCGCGACAAGGCAGCATATTCTCGTTCCATGAGTATAGAAGATAT GGAAAAGGTGGCACAAGGAAGAGTATATAACGGGGAGGATGCAGTCGCGAACGGGTTAGTAGATGCAGTTGGCGGGATCTCCCGGGCAATAGCCATTGCC AAACACAAGGCCAACATCCCCCTTAACAAACCGGTGCGTGTGGAGATTGTGGAGCTTTCGAAACCCACATCGTCGATGCCTGAGTTCATAGCTGCGCTCG GGACTACGATAGCCGGATTAGACAAAGCACTGGCGATGGGATCAACGTATAGTGGAGCTCAAGCTTGGATGGACTTGCCGTTCCAGGAGATGGACAGAGG AGGATCGAGTTCGGTTTCAAGCAAACCGATTTTCACTATCATGGAATTTTTCCTCAAGTTCAACGTGGAAGGACTCTTCGAATGA
AA sequence Show only first row Show all	>Lus10013335 pacid=23151395 polypeptide=Lus10013335 locus=Lus10013335.g ID=Lus10013335.BGIv1.0 annot-version=v1.0 MNFSELHKRIGLHKHAVSRGRYAEFPSVGYRPLRPDEKELLENQTEHWYEIFRDKAAYSRSMSIEDMEKVAQGRVYNGEDAVANGLVDAVGGISRAIAIA KHKANIPLNKPVRVEIVELSKPTSSMPEFIAALGTTIAGLDKALAMGSTYSGAQAWMDLPFQEMDRGGSSSVSSKPIFTIMEFFLKFNVEGLFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	0	1
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	1.0	0.9766
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	1.4	0.9575
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	2.4	0.9322
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	2.4	0.9503
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	2.8	0.9283
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	3.5	0.9497
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	4.5	0.9348
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	5.5	0.9045
					Lus10002011 [exp]	5.9	0.9300
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	6.9	0.9128

Compare expression of checked genes

Lus10013335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.