Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 231 / 3e-69 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013332 [exp] 299 / 1e-94 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 293 / 2e-92 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10013333 [exp] 286 / 1e-89 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10021721 [exp] 226 / 4e-67 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10034647 [exp] 220 / 2e-63 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 196 / 6e-56 AT1G73990 821 / 0.0 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 233 / 1e-69 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10013336 pacid=23151393 polypeptide=Lus10013336 locus=Lus10013336.g ID=Lus10013336.BGIv1.0 annot-version=v1.0 ATGACGGAGCTACAACGCCTATCCCTCATGCCAACTCTTCCTCACGCTCCATCCGTCAGAAACTACCCCACCACTTCCTCCATGATCCTATGCCACCAAC GTCAAACCACCAGCCTTCATCGTTCATGTGCTGTTTTTTCTCTCCGGTCCGCCGGCGGCGGGAGGGGAGATCATGGGTTGGTGGTTCGGGCATTCGAATC GAATGAAGTAGTTGCAGATGATGATCAGTCGTTGTTGTCGTCCACCAACGGCAGTAGTTCCGCCACAAGGTTTAACAAAGCGGCGGTGGCGGAGGAGTTC CCCGGAGACCCTGAGGCGGCGTTCGAAGTGAGGAAGGAAGTTGATGGGTGGGAAGGGTTTCTTCTGAAGCTCCGGCTGATGATAGCTCCACCGTGGCAGC GGGTCCCACATGGCAGTGTCTTGACTATCGATCTAGGCGGCACGGTCCGAATAACGGATGTGAAGGGACAGTGGTTCGGGCCACCGTTAGCGCTGCCGGA AATTTGTGAGAACTTAGCTAAAGCGGCAAATGATCCTCGGATCTCCGGCGTCTATCTAAGAATTAGCTTCATGGAGTGTGGGTGGGCCAAATTGGACGAA ATTCGTCGCCATATTTTGGCTTTCCGTAAATCGGGAAAGAAGAGAGAGGATTTGGAGAACATAATTAATGAAGGGGTCTACGTTGTTGCCCGGCTCAAGG AGGAAGGCCTCATTACTGACGTTCTCTATGAAGATGAGCCGTTCAATCCGACATGGCAGGTGATGTCAATGTTGAAAGCTAAACTTGGAATACCAAAGGA GAAAGATCTGCCTATTGTTGACTACAAGAGATATTCGAAAGTGACGAACTGGACACTGGGCTTGAACTCCGGAGAAGATGCAATCGGTGTGATCCGAGCA TCGGGCCTCGTCGTCATGGGATGGAGTTTCTTAAACTTGCCGGGCTCTGCCATCACTCCCGACAGCCTCAAAAAACAGTTTCGTAAAATCCGAGAGTCCA AGAAATACAAAGCAGCGGTTATCAGAATCGACTGCGCTGGTGGCGATGCCCTTGCATCAGATATGATTTGGAGGGAAATTCAGCTATTGGCAGCAGAAAA ACCAGTGATAGCATCGCTGTCGGACATGGCAGCCAGCGGGGGTTACTATATAGCAATGGCAGCCACTGCCATCGTCGCGGAGAAGCTGTCTGTGGCTTCT TCTATCGGTATTCTTCAAGGTGCAGAAATAGGATACCGATTTCATGTATGA
AA sequence Show only first row Show all	>Lus10013336 pacid=23151393 polypeptide=Lus10013336 locus=Lus10013336.g ID=Lus10013336.BGIv1.0 annot-version=v1.0 MTELQRLSLMPTLPHAPSVRNYPTTSSMILCHQRQTTSLHRSCAVFSLRSAGGGRGDHGLVVRAFESNEVVADDDQSLLSSTNGSSSATRFNKAAVAEEF PGDPEAAFEVRKEVDGWEGFLLKLRLMIAPPWQRVPHGSVLTIDLGGTVRITDVKGQWFGPPLALPEICENLAKAANDPRISGVYLRISFMECGWAKLDE IRRHILAFRKSGKKREDLENIINEGVYVVARLKEEGLITDVLYEDEPFNPTWQVMSMLKAKLGIPKEKDLPIVDYKRYSKVTNWTLGLNSGEDAIGVIRA SGLVVMGWSFLNLPGSAITPDSLKKQFRKIRESKKYKAAVIRIDCAGGDALASDMIWREIQLLAAEKPVIASLSDMAASGGYYIAMAATAIVAEKLSVAS SIGILQGAEIGYRFHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	1.0	0.9631
AT3G48200			unknown protein		Lus10035212 [exp]	1.7	0.9518
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	2.8	0.9609
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	5.9	0.9405
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	6.0	0.9383
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	6.0	0.9408
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	6.9	0.9295
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	8.8	0.9378
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	8.8	0.9287
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	8.9	0.9361

Compare expression of checked genes

Lus10013336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.