Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 379 / 4e-128 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 372 / 2e-125 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 366 / 1e-122 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT5G53990 364 / 2e-122 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 364 / 3e-122 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 363 / 4e-122 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 363 / 6e-122 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 354 / 1e-118 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 338 / 4e-112 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 323 / 3e-106 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040178 [exp] 452 / 1e-156 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 450 / 1e-155 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10008453 [exp] 406 / 2e-138 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10039237 [exp] 274 / 1e-88 AT5G54010 240 / 5e-76 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 240 / 7e-74 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 191 / 4e-55 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 165 / 2e-45 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 163 / 5e-45 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 162 / 1e-44 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097900 [exp] 407 / 9e-139 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 386 / 1e-130 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 309 / 3e-101 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 253 / 8e-79 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 189 / 1e-54 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 179 / 9e-51 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 167 / 3e-46 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 167 / 4e-46 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 166 / 9e-46 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 157 / 8e-43 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013337 pacid=23151401 polypeptide=Lus10013337 locus=Lus10013337.g ID=Lus10013337.BGIv1.0 annot-version=v1.0 ATGGCCGACGGCAAGATCCGGGCGACGACGAAGCCACACGTGGCGATGTTCCCATGGTTCGCATTTGGCCACATCACCCCCTACCTCCACCTGGCCAACC ACCTGGCATCCCGAGGCCACCGTGTCTCTTTCCTCATCCCCAAACGGACGCAATCCAAGTTCACCAAACTCAACCGACATCCACACCTCATCACCTTCCA CCCAATCACAGTCCCCCACGTGGATGGCCTTCCTCCCGGCGCGGAAACATCCTACGACGCGCCGTTCCCTCTCGTGATGTTCCTCTTCACCGCCTTCGAC CGGACTCAACCTCAGGTGAGAGAGATTCTCACCGAACTGAACCCGAGCTTGGTACTCTACGACCTGGCCCACTGGATCCCGTCGCTGGGACTCGAGTTGG GCTTCAAGAAGGTCGCGTACGTCACCGCATCGGCCGTCTCCTCCGCTCTCCGAATCCTGCCGTCGGTCAAAATGGTCAAGGGGATGACCGACGCCGAGCT GATGCGGCCCCCACCGGGCTATCCTTCTTCCGTCGTTGTTCCTAGGCTGGACGAGGTTGACCAGGCGAGGTTTCTCGCCGAGGATTTCGGAGGCTCCGCC GTCCCGTTCTACGAGCGGTTGACGGCAAGTAACAGTGGAGGTGACGCAATTGCCTTCAGGACTTGTCGTGAGCTTGAAGGTCAGTTTTGTGACTACTTGG GCCAGCAGTACGGGAAGCCCATTCTGCTGACTGGGCCCATCCTCCCCGACGAGGATAAAACGCCGATGACGGCGGAGGATGAGAAGTTGTTTAGCTGGCT TGGAAACTTCGACGGAGGTTCGGTGGTGTACTGTGCTTTCGGGAGTGAAATTGCTCTGGGGAAAGACCAATTTCAGGAGCTCCTGAACGGCTTCGAGTTA TGCGGGCTCCCATTCCTGGCAGCACTGAAGCCGCCGGCGGGGTGTTCAACGGTGGAGGAGGCGTTTCCAGAAGGGTTCGAGGATAAGGTAAGGGGAAGAG GCTGGGTCACCGGAGGGTGGGTCCCGCAGCAGCGGATTCTGGACCATGCGTCGGTAGGGTGCTTCGTGAGCCACTGTGGGTTCGGGTCAATGTGGGAAGG TCTGCTGAGCAAGTGCCAGCTGGTTATGGCCCCCACTCTCGGCGACCAGATAATGGGAACGATGCTGATGGTCAACGAGCTTAAGGTGGCCGTGGAAGTG GAGAAGATCAAGTCCGGTGATCGGTGGTGGATTGCGAAGGAGAAGTTGAGTGAGGCAATCAGGGCTGTGATGGATGGTGATGGTGAAGTTGGTGGAGAAG TGAGGAGGAACCATTTGAAGTTTAGAGAGGTTTTGGGGGAGAAGAAGGTTCATGATAAGTATGTTGATGACTTTGTTGTGCAGATTCATGATCTCTTGGA TGCCTAA
AA sequence Show only first row Show all	>Lus10013337 pacid=23151401 polypeptide=Lus10013337 locus=Lus10013337.g ID=Lus10013337.BGIv1.0 annot-version=v1.0 MADGKIRATTKPHVAMFPWFAFGHITPYLHLANHLASRGHRVSFLIPKRTQSKFTKLNRHPHLITFHPITVPHVDGLPPGAETSYDAPFPLVMFLFTAFD RTQPQVREILTELNPSLVLYDLAHWIPSLGLELGFKKVAYVTASAVSSALRILPSVKMVKGMTDAELMRPPPGYPSSVVVPRLDEVDQARFLAEDFGGSA VPFYERLTASNSGGDAIAFRTCRELEGQFCDYLGQQYGKPILLTGPILPDEDKTPMTAEDEKLFSWLGNFDGGSVVYCAFGSEIALGKDQFQELLNGFEL CGLPFLAALKPPAGCSTVEEAFPEGFEDKVRGRGWVTGGWVPQQRILDHASVGCFVSHCGFGSMWEGLLSKCQLVMAPTLGDQIMGTMLMVNELKVAVEV EKIKSGDRWWIAKEKLSEAIRAVMDGDGEVGGEVRRNHLKFREVLGEKKVHDKYVDDFVVQIHDLLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	0	1
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	1.0	0.9833
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	2.4	0.9652
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	4.0	0.9239
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	4.6	0.9514
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	4.9	0.9480
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	4.9	0.9331
AT5G06270			unknown protein		Lus10029413 [exp]	6.9	0.9066
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	7.4	0.9470
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	7.5	0.9254
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	7.9	0.9210

Compare expression of checked genes

Lus10013337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.