Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44200 751 / 0 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 424 / 2e-139 ATNEK5 NIMA-related kinase 5 (.1) AT3G04810 427 / 2e-138 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 424 / 1e-137 ATNEK3 NIMA-related kinase 3 (.1) AT1G54510 421 / 5e-136 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 413 / 1e-133 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G12200 315 / 3e-96 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G53570 141 / 1e-34 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT2G37840 140 / 7e-34 Protein kinase superfamily protein (.1.2) AT5G18700 140 / 1e-33 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001857 [exp] 1657 / 0 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 427 / 1e-138 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 427 / 3e-138 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10020244 [exp] 426 / 3e-138 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10040499 [exp] 424 / 6e-137 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 416 / 5e-130 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10015928 [exp] 396 / 3e-126 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 395 / 4e-126 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10031834 [exp] 379 / 4e-122 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218100 [exp] 941 / 0 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 895 / 0 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 437 / 8e-142 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 433 / 6e-140 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.002G049400 [exp] 430 / 2e-139 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G018700 [exp] 426 / 1e-138 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 424 / 1e-137 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.005G051600 [exp] 427 / 2e-137 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 423 / 1e-136 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.012G143900 [exp] 138 / 4e-33 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013338 pacid=23151384 polypeptide=Lus10013338 locus=Lus10013338.g ID=Lus10013338.BGIv1.0 annot-version=v1.0 ATGGAATCTCGAATGGATCAGTATGAGATCATGGAGCAGATCGGCCGAGGTGCATTTGGCGCCGCCATTCTAGTCAATCACAAAGTGGAGAAGAAGAAGT ACTGCACACAGTCTTATGTGCTCTTGTATGTTCTGAAGAAGATCCGCCTCGCTCGCCAAACGGAACGATGCCGCCAATCTGCTCATCAAGAAATGGCGCT CATTGCTCGAATTCAGCACCCTTACGTTGTCGAGTACAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTCTGTATTGTGACTGGATACTGTGAAGGTGGA GATATAGCTGAACTGATGAAGAAGTCGAATGGTGTTTATTTCCCTGAGGAGAAACTTTGCAAGTGGTTCACTCAACTTCTGTTAGCTGTTGAATACCTTC ATTCTAATTACGTTCTCCACCGTGATCTGAAATGTTCGAATATCTTTCTGACTAAAGATCATGATGTTCGCCTTGGGGATTTCGGACTTGCTAAAACCTT GAAGGCAGATGACTTGGCTTCTTCGGTGGTTGGGACTCCCAATTACATGTGTCCGGAGCTGCTTACAGATATTCCTTATGGCTTCAAATCGGACATTTGG TCTTTAGGTTGTTGTATGTATGAGATGGCTGCTCATCGTCACGCTTTCAAAGCTTTCGATATGGCTGGACTAATAAGCAAGATAAATCGTTCATCAATGG GCCCTTTGCCTTCTTGCTATTCCCCATCATTGAAATCACTAATTAAATGCATGCTGAGGAAAAATCCCGAGCATCGGCCTAGTGCATCCGAGGTCCTAAA GCATCCCTACTTGCAGCCATATGTGGACCAGTACCGTTCGTCTTTTAGTCCTCCAATTTGCTCAGCTGATAGACGTCTTTCTGCTAGCCGTGCTAGTAGG AAAAGTACGGCTGAGAGCCAGAGCAGCAATAGTTCTAGTAGCGATAGAGACAGTTACCTTTCAAGTAAGAGAAATATATCTGCAGTGGCATCAAATTGCA AGAATAAAGGTACTGATACAGACTTGGCCTCGGTTGATGATGATGATGGAGATGATAATGACACTGAACAAGCCACACCAGGCCAAGGAGAACACAATCA TACTGTTCATACAGAGAAAATCAATGAACAGAAAGCGATGAAGTCTAATCATGAAGAGAATGGATCCAATGTTGAGTCCAAACAGCCTAACGCCATTAGA AGTATTATGATGGCCTTGAAAGAAGGAAAGGCCAGAGAAAATGGCTCACCACTTAGAGGTGCTCGTCCAAAAGCTGTAGGTATAATGACACCAAGGAGTA ACACGGAACCTTTGTCTAGAATACCGAAACCTACAGCCATTGCTCCTAGTTTGAAGAATAATGTAGATGCTCCAACTGCTGCGCAAGGAAAGTTTGGATT TGAATCCATGAAGCGGATTCAAGGATCAAACCCTTCAAAGCACCAGTTACCAGTACCTGACTCCTCGCCAAAGACGAAACCAAGAAATGATGGAATTCCT CCATCTTTCCCTGTAAAGAATATTGGTGAGGGACATGCTGCAAAGTCCAGGCTGAGAACTCCACCTTCCAACATTGTTCGACGGTGTTCATTCCCTGGAC CGAATAGACAAGGCAGATCCGATCTCCCAACTGATGTTTCCGGCATGACTAAGTCCCCTCCAAACACTTCTCGGAAAGTGCCTGATCTGCAGTTTACACA CTTCACCAAGGAAGCCAAGCAAGAGAAAGCTGCAGGTGGAGTTTCGAGAGTGTCACAAACAGATAGCAGTAATTCTGCTTCCTCTGCAGTTTCAGCTCAA GCATCTGAACTTTATGATGATGCAACCACTTCATTTGTTGACATGACAACAGAGTCACCTCCAAATCATGAGATAGATGCAGAGGATAGAAGTGTGGACC CTCCAGCATCAAGAGTCTCACCTCGGGGAAATCAGTTACGTGTTCCAGGATCCTTGATCTGTTCACCTGAACCTTCTAATGGCCAATCGGATGCCAATAA TGCAAATTCTTCCACCAATGCTGGTAACCTGATGTCAAGTTCAGCTCTGCATTTATCATTTCCGGTCACTGAAGATATGACCATCCACAAGGAGGATATT CTTGAAAGCCAGCCCTGTAATGCACCTGCTACGGTACATGGAGGATCAAATGGTATTACTTCTCCATCTAGACATGGTGACGACAAGTTCACAGTGACGG AACTTCTATCCGTTTCAGAGGCTGCTGGTATTTCTTCACCTCTCTCGCCAATTTCTGCTCCTCAAAGTTACCCACATCCAGCTGAAAAGGATGATGCTAA TGATACTCCAGCTGGCTGTCCTCCTCCTTTCGACGATGTCATACACGTCATTCGCCACAGCAGTTTCCGTGTCGGGAATGACCAACCCGTCATGGAAACC GTCGAGATGGGAGGATGCGGAACGAGTCAAAACATCGATTTCGGGAAACTCATGAACGTAGTGAGAGATGAATTAGATTTGAGAAATGGGGGTCCTGCTC CTCCACTGACACTTAAATCAGCTGGTGAATCTGAATCTTCGAGTCTAACCGCAATGGAGGACACGAAAGTTCAGACCACTTCTCATACAACACCAGAACC GATGAAACCCAGTACTCCTCTCAAAGAAGCAGAAGAAGCATCATCATCTCCTGCAGCTAGTACAAACACGAACGAAATTCTGGATGTGAAGTCATTTCGA CAGCGAGCTGATGCCCTTGAAGGACTACTCGAACTATCTGCAGACCTGCTACAAAGCAACAGACTGGAAGAACTCGCAGTCGTTCTAAGGCCATTCGGGA AAGACGCGAAGGTGTCCCCAAGGGAGACAGCTATATGGTTGGCCAAGAGTCTGAAAGGGATGATGATTGAGGAAAGTGGCCGGAGTTCATCATCTTGA
AA sequence Show only first row Show all	>Lus10013338 pacid=23151384 polypeptide=Lus10013338 locus=Lus10013338.g ID=Lus10013338.BGIv1.0 annot-version=v1.0 MESRMDQYEIMEQIGRGAFGAAILVNHKVEKKKYCTQSYVLLYVLKKIRLARQTERCRQSAHQEMALIARIQHPYVVEYKEAWVEKGCYVCIVTGYCEGG DIAELMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLTDIPYGFKSDIW SLGCCMYEMAAHRHAFKAFDMAGLISKINRSSMGPLPSCYSPSLKSLIKCMLRKNPEHRPSASEVLKHPYLQPYVDQYRSSFSPPICSADRRLSASRASR KSTAESQSSNSSSSDRDSYLSSKRNISAVASNCKNKGTDTDLASVDDDDGDDNDTEQATPGQGEHNHTVHTEKINEQKAMKSNHEENGSNVESKQPNAIR SIMMALKEGKARENGSPLRGARPKAVGIMTPRSNTEPLSRIPKPTAIAPSLKNNVDAPTAAQGKFGFESMKRIQGSNPSKHQLPVPDSSPKTKPRNDGIP PSFPVKNIGEGHAAKSRLRTPPSNIVRRCSFPGPNRQGRSDLPTDVSGMTKSPPNTSRKVPDLQFTHFTKEAKQEKAAGGVSRVSQTDSSNSASSAVSAQ ASELYDDATTSFVDMTTESPPNHEIDAEDRSVDPPASRVSPRGNQLRVPGSLICSPEPSNGQSDANNANSSTNAGNLMSSSALHLSFPVTEDMTIHKEDI LESQPCNAPATVHGGSNGITSPSRHGDDKFTVTELLSVSEAAGISSPLSPISAPQSYPHPAEKDDANDTPAGCPPPFDDVIHVIRHSSFRVGNDQPVMET VEMGGCGTSQNIDFGKLMNVVRDELDLRNGGPAPPLTLKSAGESESSSLTAMEDTKVQTTSHTTPEPMKPSTPLKEAEEASSSPAASTNTNEILDVKSFR QRADALEGLLELSADLLQSNRLEELAVVLRPFGKDAKVSPRETAIWLAKSLKGMMIEESGRSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	0	1
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	1.4	0.8887
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	3.5	0.8114
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	4.0	0.8110
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	4.2	0.7990
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	5.7	0.7843
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	6.3	0.7747
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	7.1	0.7409
AT5G40740			unknown protein		Lus10014617 [exp]	7.3	0.7804
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	7.6	0.8350
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	7.7	0.7446

Compare expression of checked genes

Lus10013338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.