Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44190 451 / 1e-158 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 441 / 8e-155 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 49 / 6e-06 NDC1 NAD(P)H dehydrogenase C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001856 [exp] 690 / 0 AT3G44190 506 / 1e-180 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10008365 [exp] 199 / 4e-61 AT3G44190 305 / 9e-103 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10004789 [exp] 144 / 5e-42 AT3G44190 140 / 4e-41 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10032131 [exp] 51 / 1e-06 AT5G08740 610 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10014555 [exp] 50 / 3e-06 AT5G08740 647 / 0.0 NAD(P)H dehydrogenase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217800 [exp] 489 / 6e-174 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10013339 pacid=23151338 polypeptide=Lus10013339 locus=Lus10013339.g ID=Lus10013339.BGIv1.0 annot-version=v1.0 ATGACCGGAATCACGGGAAGCCAGAAGGACTCATCATCATCGCCGTCGACTATCGGACGGAGGCTAGTCATTGTCGGAGGAGGTGTCGCCGGTTCACTGC TCGCCAAATCTGCTCAATTCACCGCCGACGCTACCCTAATTGACCCAGAGAAGGACTATTACGAGATTACCTGGGCAAACTTGAGGGGTATGGTGGAGCC TGCATTTGCGGAGAGAATAGTGATCAAGCATCGAGATTACTTCACGAACGGACGTATCGTGACATCTCATGCAATCAATATCACTGAGAGAGAAGTATTG ACTTATACTGGAGAATCAGTTCCGTATGATTATCTTGTTATTGCAACTGGCCACAAGGATCCTCTCCCAGAAACCAGGAAGGATAGACTCGCCCAATTTC GTGCAGAAAATGAGAGGATCAAGGCTGCTAGTTCGATATTGATCATCGGAGGAGGTCCCTCTGGAGTCGAACTTGCTGCAGAAATTGCTGTCGATTTCCC TGATAAGGAGGTGACGCTGGTTCACAACGGTCCGAGGCTGCTGGAATTTATCGGACCAAAGGCCGGAGCCAAGGCACTGAAATGGCTGAAATCCAAGAAG GTGGAAGTAAAGCTGGAGCAGAGAGTTGATTTAAACAACGTCTCAGATGTCGATGGCAGCAAAGTGTATCATACAACATTAGGGGAGACCATCAAAGCAG ATATCCACTTCCTCTGCGCAGGGAAACCTCTAGCATCATCATGGCTCAAGGACACAATACTGGGGGAAAACCTGGATTCCAAAGGCAGGTTGATGGTTGA TGAACATTTGAAGGTCAAGGGCAGAGACAACGTCTTCGCTATCGGAGACATCACCGATGTTCCTGAGATGAAACAAGGGTATCTAGCGCAAAGCCATGCT AAGGTGGTTGCGAAGAATCTGAAGGTGATGATGAGCAGTGAGAAGCAATGTAGCAAGCAGTGCAGGATGAGCAGTTACAAACCGGGATCGGAGATGGCGA TTGTTTCGCTCGGCAGAAGGGAAGCAGTGGCGCAGTTTCCATTTGCGACAGTCGGCGGTGTTCTTCCTGGCTATATCAAGTCGAGAGACATGTTTGTGGG GAAAACCAGGGAGCTGATGGGACTACACTCTAATGTCGTAGAACTCGAAACAGAGGATTGA
AA sequence Show only first row Show all	>Lus10013339 pacid=23151338 polypeptide=Lus10013339 locus=Lus10013339.g ID=Lus10013339.BGIv1.0 annot-version=v1.0 MTGITGSQKDSSSSPSTIGRRLVIVGGGVAGSLLAKSAQFTADATLIDPEKDYYEITWANLRGMVEPAFAERIVIKHRDYFTNGRIVTSHAINITEREVL TYTGESVPYDYLVIATGHKDPLPETRKDRLAQFRAENERIKAASSILIIGGGPSGVELAAEIAVDFPDKEVTLVHNGPRLLEFIGPKAGAKALKWLKSKK VEVKLEQRVDLNNVSDVDGSKVYHTTLGETIKADIHFLCAGKPLASSWLKDTILGENLDSKGRLMVDEHLKVKGRDNVFAIGDITDVPEMKQGYLAQSHA KVVAKNLKVMMSSEKQCSKQCRMSSYKPGSEMAIVSLGRREAVAQFPFATVGGVLPGYIKSRDMFVGKTRELMGLHSNVVELETED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	0	1
					Lus10020455 [exp]	3.5	0.9680
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	4.9	0.9643
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	9.8	0.9617
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	12.6	0.9612
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	13.2	0.9399
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	14.1	0.9504
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10038813 [exp]	15.0	0.9311
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	15.2	0.9455
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	18.7	0.9589
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	18.8	0.9610

Compare expression of checked genes

Lus10013339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.